Solyc05g005670.1.1 (Solyc05g005670)

Aliases : Solyc05g005670

Description : E3 ubiquitin ligase (PUB)

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc05g005670.1.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00030110	PUB15,...	U-box domain-containing protein 15 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Adi_g009234	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g013471	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g025519	PUB14, ATPUB14	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Adi_g102535	ATPUB17, PUB17	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g06113	PUB13, ATPUB13	E3 ubiquitin ligase *(PUB15) & original description: none	0.05	OrthoFinder output from all 47 species
Aev_g09883	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Ala_g33983	ATPUB17, PUB17	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g03799	ATPUB17, PUB17	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Als_g13982	PUB13, ATPUB13	E3 ubiquitin ligase *(PUB8) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g14928	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.07	OrthoFinder output from all 47 species
Als_g16049	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g17483	PUB15	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g19238	ATPUB17, PUB17	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g00484	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g10750	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g19192	ATPUB17, PUB17	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g21703	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g60695	ATPUB17, PUB17	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene01129.t1	PUB14, ATPUB14,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene43159.t1	PUB14, ATPUB14,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene44182.t1	ATPUB17, PUB17,...	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene65975.t1	PUB8, B80,...	E3 ubiquitin ligase *(PUB8) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene71894.t1	PUB8, B80,...	E3 ubiquitin ligase *(PUB8) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0001.g000295	No alias	not classified & original description: CDS=1-2304	0.03	OrthoFinder output from all 47 species
Cba_g14644	PUB14, ATPUB14	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g31838	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.13G074400.1	ATPUB17, PUB17,...	E3 ubiquitin ligase & original description:...	0.02	OrthoFinder output from all 47 species
Ceric.1Z013500.1	PUB13, ATPUB13,...	E3 ubiquitin ligase & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.34G048100.1	Ceric.34G048100	E3 ubiquitin ligase & original description:...	0.05	OrthoFinder output from all 47 species
Dac_g03673	PUB14, ATPUB14	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g12067	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g32706	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g45484	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g04450	ATPUB17, PUB17	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g05458	PUB14, ATPUB14	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Dde_g03925	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g38118	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g02654	No alias	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g02800	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g06164	ATPUB17, PUB17	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g11164	PUB12, AtPUB12	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g22153	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g29208	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01016225001	PUB14, ATPUB14	U-box domain-containing protein 14 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
GSVIVT01020229001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.05	OrthoFinder output from all 47 species
Gb_29276	ATPUB17, PUB17	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
LOC_Os02g13960.1	ATPUB17, PUB17,...	U-box domain-containing protein 4 OS=Oryza sativa subsp....	0.05	OrthoFinder output from all 47 species
LOC_Os03g32100.1	LOC_Os03g32100	U-box domain-containing protein 4 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
LOC_Os06g51130.1	PUB15, LOC_Os06g51130	U-box domain-containing protein 15 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Len_g03070	ATPUB17, PUB17	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g08985	ATPUB17, PUB17	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g08019	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_9478009g0010	PUB15	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
MA_9917294g0010	ATPUB17, PUB17	E3 ubiquitin ligase (PUB)	0.05	OrthoFinder output from all 47 species
Msp_g00627	PUB15	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Msp_g08607	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g16068	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g38088	ATPUB17, PUB17	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g38766	No alias	E3 ubiquitin ligase & original description: none	0.1	OrthoFinder output from all 47 species
Pnu_g30472	PUB13, ATPUB13	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g01237	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g30958	PUB13, ATPUB13	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0007.g003607	ATPUB17, PUB17	not classified & original description: CDS=1-2595	0.04	OrthoFinder output from all 47 species
Sam_g39035	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Smo73073	PUB39	U-box domain-containing protein 8 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Solyc02g072080.1.1	ATPUB17, PUB17,...	U-box domain-containing protein 17 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Spa_g08558	ATPUB17, PUB17	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g25117	PUB14, ATPUB14	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g48731	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g10003	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e018161_P001	PUB13, ATPUB13,...	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species
Zm00001e036734_P001	PUB14, ATPUB14,...	E3 ubiquitin ligase (PUB)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0006887	exocytosis	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0032940	secretion by cell	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0046903	secretion	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	413	449
IPR003613	Ubox_domain	280	348

External Links

No external refs found!

Solyc05g005670.1.1 (Solyc05g005670)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation