1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc05g005570.3.1

Solyc05g005570.3.1 (PG2, Solyc05g005570)


Aliases : PG2, Solyc05g005570

Description : non-catalytic polygalacturonase regulator


Gene families : OG0000218 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000218_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g005570.3.1

Target Alias Description ECC score Gene Family Method Actions
Aev_g07719 PG2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g12888 PG1 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g16373 ATRD22, RD22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g17805 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g18020 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aev_g19336 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g19537 JP630, PG3 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Aev_g24684 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g27953 PG1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g37883 JP630, PG3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g38151 ATRD22, RD22 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g01144 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g04221 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g13993 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g36421 JP630, PG3 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.1Z105700.1 Ceric.1Z105700 not classified & original description: pacid=50639167... 0.04 OrthoFinder output from all 47 species
Ceric.36G049100.1 Ceric.36G049100 not classified & original description: pacid=50569148... 0.04 OrthoFinder output from all 47 species
Dac_g26680 ATRD22, RD22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g20107 PG2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g50946 USPL1, ATUSPL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g16944 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01035693001 ATRD22, RD22 BURP domain protein RD22 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01035702001 ATRD22, RD22 BURP domain protein RD22 OS=Arabidopsis thaliana 0.08 OrthoFinder output from all 47 species
Gb_18274 PG2 non-catalytic polygalacturonase regulator 0.02 OrthoFinder output from all 47 species
Gb_39304 ATRD22, RD22 BURP domain-containing protein 3 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
LOC_Os05g12400.1 LOC_Os05g12400 BURP domain-containing protein 1 OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
LOC_Os10g26940.1 PG2, LOC_Os10g26940 non-catalytic polygalacturonase regulator 0.02 OrthoFinder output from all 47 species
Len_g09354 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g23146 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Len_g51298 ATRD22, RD22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10182290g0010 PG2 BURP domain-containing protein 16 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
MA_10429742g0010 PG2 BURP domain-containing protein 12 OS=Oryza sativa subsp.... 0.1 OrthoFinder output from all 47 species
MA_5913418g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_79669g0010 PG2 BURP domain-containing protein 16 OS=Oryza sativa subsp.... 0.06 OrthoFinder output from all 47 species
MA_947311g0010 PG2 BURP domain-containing protein 16 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
Nbi_g07879 ATRD22, RD22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g37368 PG1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g37549 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g062300.3.1 ATRD22, RD22,... BURP domain-containing protein 3 OS=Oryza sativa subsp.... 0.12 OrthoFinder output from all 47 species
Spa_g22747 PG1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g05891 PG2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g24644 JP630, PG3 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g42231 USPL1, ATUSPL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR004873 BURP_dom 407 619
No external refs found!