1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc05g005240.2.1

Solyc05g005240.2.1 (INO, Solyc05g005240)


Aliases : INO, Solyc05g005240

Description : transcription factor (YABBY)


Gene families : OG0002690 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002690_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc05g005240.2.1
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00047p00199030 CRC,... RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
AT1G23420 INO Plant-specific transcription factor YABBY family protein 0.05 OrthoFinder output from all 47 species
AT1G69180 CRC Plant-specific transcription factor YABBY family protein 0.04 OrthoFinder output from all 47 species
AT2G26580 YAB5 plant-specific transcription factor YABBY family protein 0.03 OrthoFinder output from all 47 species
GSVIVT01012246001 CRC RNA biosynthesis.transcriptional activation.C2C2... 0.05 OrthoFinder output from all 47 species
LOC_Os07g06620.2 YAB2, LOC_Os07g06620 transcription factor (YABBY) 0.04 OrthoFinder output from all 47 species
LOC_Os12g42610.1 YAB5, LOC_Os12g42610 transcription factor (YABBY) 0.03 OrthoFinder output from all 47 species
MA_10432332g0010 YAB5 transcription factor (YABBY) 0.02 OrthoFinder output from all 47 species
MA_407206g0010 YAB5 transcription factor (YABBY) 0.03 OrthoFinder output from all 47 species
Solyc01g091010.3.1 AFO, YAB1, FIL,... transcription factor (YABBY) 0.02 OrthoFinder output from all 47 species
Zm00001e003268_P003 AFO, YAB1, FIL,... transcription factor (YABBY) 0.03 OrthoFinder output from all 47 species
Zm00001e012387_P001 YAB5, Zm00001e012387 transcription factor (YABBY) 0.02 OrthoFinder output from all 47 species
Zm00001e012388_P001 YAB5, Zm00001e012388 transcription factor (YABBY) 0.02 OrthoFinder output from all 47 species
Zm00001e017951_P002 YAB5, Zm00001e017951 transcription factor (YABBY) 0.02 OrthoFinder output from all 47 species
Zm00001e032845_P002 YAB2, Zm00001e032845 transcription factor (YABBY) 0.03 OrthoFinder output from all 47 species
Zm00001e038717_P002 CRC, Zm00001e038717 transcription factor (YABBY) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0007275 multicellular organism development IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR006780 YABBY 12 159
No external refs found!