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  5. Solyc04g150156.1.1

Solyc04g150156.1.1 (TUB6, Solyc04g150156)


Aliases : TUB6, Solyc04g150156

Description : Tubulin beta-1 chain OS=Zea mays (sp|p18025|tbb1_maize : 126.0)


Gene families : OG0000152 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000152_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g150156.1.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00229980 TUB6,... Tubulin beta-6 chain OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT1G20010 TUB5 tubulin beta-5 chain 0.03 OrthoFinder output from all 47 species
AT1G75780 TUB1 tubulin beta-1 chain 0.03 OrthoFinder output from all 47 species
AT5G12250 TUB6 beta-6 tubulin 0.02 OrthoFinder output from all 47 species
Dcu_g45223 TUB6 beta-Tubulin component *(TUB) of alpha-beta-Tubulin... 0.02 OrthoFinder output from all 47 species
Gb_22609 TUB6 component beta-Tubulin of alpha-beta-Tubulin heterodimer 0.04 OrthoFinder output from all 47 species
Gb_28116 TUB6 component beta-Tubulin of alpha-beta-Tubulin heterodimer 0.04 OrthoFinder output from all 47 species
Gb_29799 TUB6 component beta-Tubulin of alpha-beta-Tubulin heterodimer 0.03 OrthoFinder output from all 47 species
Lfl_g05333 TUB6 beta-Tubulin component *(TUB) of alpha-beta-Tubulin... 0.03 OrthoFinder output from all 47 species
Ppi_g62362 TUB8 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo183654 TUB6 Cytoskeleton.microtubular network.alpha-beta-Tubulin... 0.04 OrthoFinder output from all 47 species
Smo23403 TUB2 Cytoskeleton.microtubular network.alpha-beta-Tubulin... 0.03 OrthoFinder output from all 47 species
Smo266715 TUB6 Cytoskeleton.microtubular network.alpha-beta-Tubulin... 0.03 OrthoFinder output from all 47 species
Spa_g07504 TUB6 not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0010333 terpene synthase activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
InterPro domains Description Start Stop
IPR003008 Tubulin_FtsZ_GTPase 2 65
No external refs found!