1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc04g082470.3.1

Solyc04g082470.3.1 (LWD1, ATAN11, Solyc04g082470)


Aliases : LWD1, ATAN11, Solyc04g082470

Description : LWD circadian clock activation factor


Gene families : OG0002975 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002975_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g082470.3.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Adi_g084067 LWD1, ATAN11 circAdian clock activation factor *(LWD) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01032940001 LWD1, ATAN11 WD repeat-containing protein LWD1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Zm00001e014684_P001 LWD1, ATAN11,... WD repeat-containing protein LWD1 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e015450_P001 ATTTG1, TTG,... Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0017150 tRNA dihydrouridine synthase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0106413 dihydrouridine synthase activity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 264 297
IPR001680 WD40_repeat 175 206
No external refs found!