Solyc04g082070.4.1 (Solyc04g082070)

Aliases : Solyc04g082070

Description : tRNA pseudouridine synthase (TruA)

Gene families : OG0006025 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006025_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc04g082070.4.1
Cluster	HCCA: Cluster_22

Target	Alias	Description	ECC score	Gene Family Method
Adi_g045626	No alias	EC_5.4 intramolecular transferase & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g08765	No alias	EC_5.4 intramolecular transferase & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os02g44810.1	LOC_Os02g44810	tRNA pseudouridine synthase (TruA)	0.04	OrthoFinder output from all 47 species
Pir_g07474	No alias	EC_5.4 intramolecular transferase & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g17957	No alias	EC_5.4 intramolecular transferase & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g10018	No alias	EC_5.4 intramolecular transferase & original description: none	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
MF	GO:0009982	pseudouridine synthase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR020097	PsdUridine_synth_TruA_a/b_dom	208	275

External Links

No external refs found!