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Aliases : Solyc04g081950
Description : Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana (sp|q9ln22|ppr54_arath : 689.0)
Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00002p00205450 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At3g25210,... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00002p00271910 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At3g22670,... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00019p00238660 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g20300,... | 0.04 | OrthoFinder output from all 47 species | |
| AMTR_s00022p00121040 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g77360,... | 0.05 | OrthoFinder output from all 47 species | |
| AMTR_s00022p00129420 | evm_27.TU.AmTr_v1... | Putative pentatricopeptide repeat-containing protein... | 0.04 | OrthoFinder output from all 47 species | |
| AMTR_s00033p00156340 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g80550,... | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00044p00153760 | evm_27.TU.AmTr_v1... | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00078p00045650 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g52640,... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00105p00044870 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g71060,... | 0.03 | OrthoFinder output from all 47 species | |
| AMTR_s00131p00098210 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At1g13040,... | 0.02 | OrthoFinder output from all 47 species | |
| AT1G02420 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| AT1G20300 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | OrthoFinder output from all 47 species | |
| AT1G71060 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT1G77360 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.01 | OrthoFinder output from all 47 species | |
| AT3G49730 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT3G60050 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT5G15010 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | OrthoFinder output from all 47 species | |
| AT5G43820 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | OrthoFinder output from all 47 species | |
| Adi_g023342 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g057762 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g103303 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g01020 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g03187 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Aev_g48152 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g01092 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g22080 | EMB2261 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g31957 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g15608 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Aob_g40520 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g31482 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene46984.t1 | Aspi01Gene46984 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0333.g065453 | No alias | not classified & original description: CDS=1-1836 | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g24502 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g78360 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.09G082800.1 | Ceric.09G082800 | not classified & original description: pacid=50587508... | 0.03 | OrthoFinder output from all 47 species | |
| Dac_g07047 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Dcu_g03049 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Dcu_g04707 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g04814 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g06272 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g32634 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g02250 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g24766 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g50968 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g13495 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g14509 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01007280001 | No alias | Pentatricopeptide repeat-containing protein At3g49730... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01008815001 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01014289001 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01015982001 | No alias | Pentatricopeptide repeat-containing protein At1g80880,... | 0.01 | OrthoFinder output from all 47 species | |
| GSVIVT01017111001 | No alias | Pentatricopeptide repeat-containing protein At3g16010... | 0.01 | OrthoFinder output from all 47 species | |
| GSVIVT01022794001 | No alias | Pentatricopeptide repeat-containing protein At1g73400,... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01026360001 | No alias | Pentatricopeptide repeat-containing protein At5g18390,... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01026463001 | No alias | Pentatricopeptide repeat-containing protein At2g13420,... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01027388001 | No alias | Pentatricopeptide repeat-containing protein At1g80550,... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01029740001 | No alias | Pentatricopeptide repeat-containing protein At3g62470,... | 0.05 | OrthoFinder output from all 47 species | |
| Gb_06907 | No alias | Pentatricopeptide repeat-containing protein At1g80550,... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_10944 | No alias | Pentatricopeptide repeat-containing protein At3g22670,... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_11871 | No alias | Pentatricopeptide repeat-containing protein At3g49730... | 0.04 | OrthoFinder output from all 47 species | |
| Gb_12874 | No alias | Pentatricopeptide repeat-containing protein At3g61360... | 0.06 | OrthoFinder output from all 47 species | |
| Gb_13617 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_19758 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_20750 | No alias | Pentatricopeptide repeat-containing protein At5g64320,... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_22860 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_23459 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_31799 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.01 | OrthoFinder output from all 47 species | |
| Gb_32987 | No alias | Pentatricopeptide repeat-containing protein At5g18390,... | 0.02 | OrthoFinder output from all 47 species | |
| Gb_41835 | No alias | Pentatricopeptide repeat-containing protein At2g13420,... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os03g51840.1 | LOC_Os03g51840 | Pentatricopeptide repeat-containing protein At3g49730... | 0.06 | OrthoFinder output from all 47 species | |
| LOC_Os03g53490.1 | LOC_Os03g53490 | Pentatricopeptide repeat-containing protein At3g22670,... | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os04g55090.1 | LOC_Os04g55090 | Pentatricopeptide repeat-containing protein At1g80550,... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os05g28720.1 | LOC_Os05g28720 | Pentatricopeptide repeat-containing protein At3g62470,... | 0.04 | OrthoFinder output from all 47 species | |
| Lfl_g02336 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g06036 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g11461 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| MA_10139g0010 | No alias | Pentatricopeptide repeat-containing protein At3g60050... | 0.03 | OrthoFinder output from all 47 species | |
| MA_10430437g0020 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.03 | OrthoFinder output from all 47 species | |
| MA_10432868g0030 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| MA_10433557g0010 | No alias | Pentatricopeptide repeat-containing protein At2g27800,... | 0.03 | OrthoFinder output from all 47 species | |
| MA_128052g0010 | No alias | Pentatricopeptide repeat-containing protein At3g53700,... | 0.03 | OrthoFinder output from all 47 species | |
| MA_355286g0010 | No alias | Pentatricopeptide repeat-containing protein At5g15010,... | 0.03 | OrthoFinder output from all 47 species | |
| MA_387336g0010 | No alias | Pentatricopeptide repeat-containing protein At3g22670,... | 0.03 | OrthoFinder output from all 47 species | |
| MA_8206159g0010 | No alias | Pentatricopeptide repeat-containing protein At5g15010,... | 0.02 | OrthoFinder output from all 47 species | |
| MA_845827g0010 | No alias | Pentatricopeptide repeat-containing protein At1g06710,... | 0.03 | OrthoFinder output from all 47 species | |
| MA_881199g0010 | No alias | Pentatricopeptide repeat-containing protein At1g77360,... | 0.01 | OrthoFinder output from all 47 species | |
| MA_929381g0010 | OTP43 | OTP43 mitochondrial RNA splicing factor | 0.03 | OrthoFinder output from all 47 species | |
| Mp1g09820.1 | No alias | Pentatricopeptide repeat-containing protein At3g16010... | 0.04 | OrthoFinder output from all 47 species | |
| Mp4g20290.1 | No alias | Pentatricopeptide repeat-containing protein At3g06920... | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g01378 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g06739 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g03184 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g14416 | PPR40 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0017.g007283 | No alias | not classified & original description: CDS=1-1626 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g17038 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Solyc03g112560.4.1 | Solyc03g112560 | Pentatricopeptide repeat-containing protein At1g80550,... | 0.03 | OrthoFinder output from all 47 species | |
| Solyc11g071670.2.1 | Solyc11g071670 | Putative pentatricopeptide repeat-containing protein... | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g09961 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e005446_P003 | Zm00001e005446 | group-II intron mitochondrial splicing factor (MISF68) | 0.01 | OrthoFinder output from all 47 species | |
| Zm00001e006773_P001 | Zm00001e006773 | Pentatricopeptide repeat-containing protein At1g80550,... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e013118_P001 | Zm00001e013118 | Pentatricopeptide repeat-containing protein At3g61360... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e021940_P001 | Zm00001e021940 | Pentatricopeptide repeat-containing protein At5g18390,... | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e026896_P001 | Zm00001e026896 | Pentatricopeptide repeat-containing protein At3g62470,... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e028873_P001 | Zm00001e028873 | Pentatricopeptide repeat-containing protein At5g15010,... | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e031478_P001 | Zm00001e031478 | Pentatricopeptide repeat-containing protein At3g62470,... | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003678 | DNA helicase activity | IEP | HCCA |
| MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| MF | GO:0005515 | protein binding | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
| BP | GO:0006281 | DNA repair | IEP | HCCA |
| BP | GO:0006298 | mismatch repair | IEP | HCCA |
| BP | GO:0006364 | rRNA processing | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
| BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | HCCA |
| CC | GO:0030684 | preribosome | IEP | HCCA |
| MF | GO:0030983 | mismatched DNA binding | IEP | HCCA |
| CC | GO:0032040 | small-subunit processome | IEP | HCCA |
| BP | GO:0033554 | cellular response to stress | IEP | HCCA |
| BP | GO:0034470 | ncRNA processing | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | HCCA |
| No external refs found! |