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  5. Solyc04g080810.4.1

Solyc04g080810.4.1 (UBC16, Solyc04g080810)


Aliases : UBC16, Solyc04g080810

Description : Probable ubiquitin-conjugating enzyme E2 16 OS=Arabidopsis thaliana (sp|q9fwt2|ubc16_arath : 267.0)


Gene families : OG0001468 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001468_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g080810.4.1
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
Adi_g035461 UBC18 E2 ubiquitin-conjugating enzyme *(UBC15) & original... 0.04 OrthoFinder output from all 47 species
Ala_g00244 UBC16 E2 ubiquitin-conjugating enzyme *(UBC15) & original... 0.02 OrthoFinder output from all 47 species
Ceric.04G100000.1 UBC16, Ceric.04G100000 E2 ubiquitin-conjugating enzyme *(UBC15) & original... 0.04 OrthoFinder output from all 47 species
Dde_g09771 UBC16 E2 ubiquitin-conjugating enzyme *(UBC15) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g21663 UBC15, ATUBC2-1 E2 ubiquitin-conjugating enzyme *(UBC15) & original... 0.02 OrthoFinder output from all 47 species
Gb_19350 UBC16 Probable ubiquitin-conjugating enzyme E2 16... 0.02 OrthoFinder output from all 47 species
LOC_Os03g47770.1 UBC18, LOC_Os03g47770 Probable ubiquitin-conjugating enzyme E2 16... 0.04 OrthoFinder output from all 47 species
LOC_Os12g44000.1 UBC18, LOC_Os12g44000 Probable ubiquitin-conjugating enzyme E2 18... 0.03 OrthoFinder output from all 47 species
MA_132866g0010 UBC16 Probable ubiquitin-conjugating enzyme E2 16... 0.05 OrthoFinder output from all 47 species
MA_306852g0010 UBC18 Probable ubiquitin-conjugating enzyme E2 16... 0.02 OrthoFinder output from all 47 species
Mp1g00400.1 UBC16 Probable ubiquitin-conjugating enzyme E2 16... 0.03 OrthoFinder output from all 47 species
Nbi_g01644 UBC16 E2 ubiquitin-conjugating enzyme *(UBC15) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g40673 UBC16 E2 ubiquitin-conjugating enzyme *(UBC15) & original... 0.02 OrthoFinder output from all 47 species
Ore_g06318 UBC16 E2 ubiquitin-conjugating enzyme *(UBC15) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000045 autophagosome assembly IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006771 riboflavin metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007033 vacuole organization IEP HCCA
MF GO:0008531 riboflavin kinase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009231 riboflavin biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016226 iron-sulfur cluster assembly IEP HCCA
CC GO:0016469 proton-transporting two-sector ATPase complex IEP HCCA
CC GO:0016471 vacuolar proton-transporting V-type ATPase complex IEP HCCA
MF GO:0016846 carbon-sulfur lyase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031163 metallo-sulfur cluster assembly IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0033176 proton-transporting V-type ATPase complex IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0042726 flavin-containing compound metabolic process IEP HCCA
BP GO:0042727 flavin-containing compound biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
BP GO:1905037 autophagosome organization IEP HCCA
InterPro domains Description Start Stop
IPR000608 UBQ-conjugat_E2 19 154
No external refs found!