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  5. Solyc04g080700.4.1

Solyc04g080700.4.1 (Solyc04g080700)


Aliases : Solyc04g080700

Description : Bifunctional nuclease 2 OS=Arabidopsis thaliana (sp|q93vh2|bbd2_arath : 421.0)


Gene families : OG0001063 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001063_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g080700.4.1
Cluster HCCA: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00014p00133450 BBD1, ATBBD1,... Bifunctional nuclease 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G19660 No alias Wound-responsive family protein 0.04 OrthoFinder output from all 47 species
AT1G75380 BBD1, ATBBD1 bifunctional nuclease in basal defense response 1 0.1 OrthoFinder output from all 47 species
Adi_g059475 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06571 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g06898 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.09G019300.1 BBD1, ATBBD1,... not classified & original description: pacid=50586572... 0.07 OrthoFinder output from all 47 species
Ceric.22G026600.1 Ceric.22G026600 not classified & original description: pacid=50614244... 0.09 OrthoFinder output from all 47 species
Cre16.g688302 No alias No description available 0.01 OrthoFinder output from all 47 species
Ehy_g04508 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01009760001 No alias Bifunctional nuclease 2 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Gb_36898 No alias Bifunctional nuclease 2 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
LOC_Os01g50622.1 LOC_Os01g50622 Bifunctional nuclease 1 OS=Oryza sativa subsp. japonica... 0.07 OrthoFinder output from all 47 species
LOC_Os08g26870.1 LOC_Os08g26870 Bifunctional nuclease 2 OS=Oryza sativa subsp. japonica... 0.07 OrthoFinder output from all 47 species
Len_g39361 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g03796 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Mp1g11770.1 BBD1, ATBBD1 Bifunctional nuclease 1 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Nbi_g11428 BBD1, ATBBD1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10357 BBD1, ATBBD1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g33436 BBD1, ATBBD1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g06396 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27267 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08375 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e018013_P001 Zm00001e018013 Bifunctional nuclease 1 OS=Oryza sativa subsp. indica... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004476 mannose-6-phosphate isomerase activity IEP HCCA
BP GO:0006066 alcohol metabolic process IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006772 thiamine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
BP GO:0008037 cell recognition IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009228 thiamine biosynthetic process IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
BP GO:0034308 primary alcohol metabolic process IEP HCCA
BP GO:0034309 primary alcohol biosynthetic process IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042723 thiamine-containing compound metabolic process IEP HCCA
BP GO:0042724 thiamine-containing compound biosynthetic process IEP HCCA
BP GO:0044272 sulfur compound biosynthetic process IEP HCCA
BP GO:0046165 alcohol biosynthetic process IEP HCCA
BP GO:0048544 recognition of pollen IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0072527 pyrimidine-containing compound metabolic process IEP HCCA
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP HCCA
BP GO:1901615 organic hydroxy compound metabolic process IEP HCCA
BP GO:1901617 organic hydroxy compound biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003729 Bi_nuclease_dom 135 248
No external refs found!