Solyc04g080590.4.1 (PAF2, Solyc04g080590)

Aliases : PAF2, Solyc04g080590

Description : component alpha type-6 of 26S proteasome

Gene families : OG0003925 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003925_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc04g080590.4.1
Cluster	HCCA: Cluster_96

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00165080	PAF2,...	Protein degradation.26S proteasome.20S core...	0.04	OrthoFinder output from all 47 species
AT1G47250	PAF2	20S proteasome alpha subunit F2	0.1	OrthoFinder output from all 47 species
Ala_g10461	PAF2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.06	OrthoFinder output from all 47 species
Aop_g03101	PAF2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.04	OrthoFinder output from all 47 species
Aop_g04150	ARS5, PAF1, ATPSM30	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.07	OrthoFinder output from all 47 species
Aop_g37729	PAF2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.07	OrthoFinder output from all 47 species
Azfi_s0225.g058911	PAF2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.03	OrthoFinder output from all 47 species
Ceric.06G076500.1	PAF2, Ceric.06G076500	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.06	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000217.21	ARS5, PAF1, ATPSM30	Enzyme classification.EC_3 hydrolases.EC_3.4 hydrolase...	0.03	OrthoFinder output from all 47 species
Cre06.g304300	PAF2	Protein degradation.26S proteasome.20S core...	0.1	OrthoFinder output from all 47 species
Dac_g31137	PAF2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.05	OrthoFinder output from all 47 species
Dac_g40351	PAF2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.03	OrthoFinder output from all 47 species
GSVIVT01009737001	PAF2	Protein degradation.26S proteasome.20S core...	0.05	OrthoFinder output from all 47 species
Gb_26474	PAF2	component alpha type-6 of 26S proteasome	0.06	OrthoFinder output from all 47 species
LOC_Os02g04100.1	ARS5, PAF1,...	component alpha type-6 of 26S proteasome	0.08	OrthoFinder output from all 47 species
Len_g14069	PAF2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.03	OrthoFinder output from all 47 species
Lfl_g33042	PAF2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.06	OrthoFinder output from all 47 species
MA_10143842g0010	PAF2	Proteasome subunit alpha type-1-B OS=Arabidopsis...	0.06	OrthoFinder output from all 47 species
MA_45005g0010	PAF2	Proteasome subunit alpha type-1-B OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_713708g0010	PAF2	Proteasome subunit alpha type-1-A OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species
Mp4g13080.1	PAF2	component alpha type-6 of 26S proteasome	0.11	OrthoFinder output from all 47 species
Msp_g10369	ARS5, PAF1, ATPSM30	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.03	OrthoFinder output from all 47 species
Nbi_g00448	PAF2	EC_3.4 hydrolase acting on peptide bond (peptidase) &...	0.03	OrthoFinder output from all 47 species
Tin_g04437	PAF2	EC_3.4 hydrolase acTing on peptide bond (peptidase) &...	0.02	OrthoFinder output from all 47 species
Zm00001e013585_P001	ARS5, PAF1,...	component alpha type-6 of 26S proteasome	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	IEA	Interproscan
MF	GO:0004298	threonine-type endopeptidase activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005839	proteasome core complex	IEA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEA	Interproscan
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	IEA	Interproscan
MF	GO:0070003	threonine-type peptidase activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003924	GTPase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001353	Proteasome_sua/b	51	236
IPR000426	Proteasome_asu_N	28	50

External Links

No external refs found!

Solyc04g080590.4.1 (PAF2, Solyc04g080590)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation