1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc04g080240.4.1

Solyc04g080240.4.1 (Solyc04g080240)


Aliases : Solyc04g080240

Description : susceptibility factor (EXA1)


Gene families : OG0000708 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000708_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g080240.4.1
Cluster HCCA: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
Adi_g055823 No alias susceptibility factor *(EXA1) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g48838 No alias susceptibility factor *(EXA1) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g49169 No alias susceptibility factor *(EXA1) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g17669 No alias susceptibility factor *(EXA1) & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g37682 No alias susceptibility factor *(EXA1) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g14645 No alias susceptibility factor *(EXA1) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g22450 No alias susceptibility factor *(EXA1) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g31508 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g55227 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g17703 No alias susceptibility factor *(EXA1) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g70568 No alias susceptibility factor *(EXA1) & original description: none 0.06 OrthoFinder output from all 47 species
Azfi_s0013.g013373 No alias susceptibility factor *(EXA1) & original description: CDS=1-3141 0.06 OrthoFinder output from all 47 species
Azfi_s0013.g013375 No alias not classified & original description: CDS=187-2031 0.02 OrthoFinder output from all 47 species
Azfi_s0052.g031617 No alias not classified & original description: CDS=1-4227 0.02 OrthoFinder output from all 47 species
Azfi_s0073.g037093 No alias not classified & original description: CDS=389-5539 0.03 OrthoFinder output from all 47 species
Azfi_s0448.g070692 No alias susceptibility factor *(EXA1) & original description:... 0.03 OrthoFinder output from all 47 species
Cba_g72854 No alias susceptibility factor *(EXA1) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.18G008600.1 Ceric.18G008600 susceptibility factor *(EXA1) & original description:... 0.07 OrthoFinder output from all 47 species
Ceric.18G048100.1 Ceric.18G048100 susceptibility factor *(EXA1) & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.33G057600.1 Ceric.33G057600 susceptibility factor *(EXA1) & original description:... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000704.56 No alias No description available 0.03 OrthoFinder output from all 47 species
Cre04.g225350 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g04272 No alias susceptibility factor *(EXA1) & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g06463 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g10946 No alias susceptibility factor *(EXA1) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05846 No alias susceptibility factor *(EXA1) & original description: none 0.09 OrthoFinder output from all 47 species
Dcu_g39021 No alias susceptibility factor *(EXA1) & original description: none 0.06 OrthoFinder output from all 47 species
Ehy_g15753 No alias susceptibility factor *(EXA1) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01000921001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01000922001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01009695001 No alias No description available 0.08 OrthoFinder output from all 47 species
GSVIVT01033051001 No alias No description available 0.07 OrthoFinder output from all 47 species
LOC_Os01g69990.1 LOC_Os01g69990 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g14158 No alias susceptibility factor *(EXA1) & original description: none 0.06 OrthoFinder output from all 47 species
Len_g20603 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g54503 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g04295 No alias susceptibility factor *(EXA1) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g07445 No alias susceptibility factor *(EXA1) & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g15785 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g16227 No alias susceptibility factor *(EXA1) & original description: none 0.04 OrthoFinder output from all 47 species
MA_10117g0030 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_10425836g0010 No alias susceptibility factor (EXA1) 0.04 OrthoFinder output from all 47 species
MA_10425836g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp8g07340.1 No alias susceptibility factor (EXA1) 0.03 OrthoFinder output from all 47 species
Msp_g20541 No alias susceptibility factor *(EXA1) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g32509 No alias susceptibility factor *(EXA1) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g03874 No alias susceptibility factor *(EXA1) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g06775 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g16118 No alias susceptibility factor *(EXA1) & original description: none 0.1 OrthoFinder output from all 47 species
Ore_g23458 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Ore_g39472 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g04378 No alias susceptibility factor *(EXA1) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g19486 No alias susceptibility factor *(EXA1) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g36030 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g46347 No alias susceptibility factor *(EXA1) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g54992 No alias susceptibility factor *(EXA1) & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0057.g014813 No alias susceptibility factor *(EXA1) & original description:... 0.02 OrthoFinder output from all 47 species
Sam_g11581 No alias susceptibility factor *(EXA1) & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g24517 No alias susceptibility factor *(EXA1) & original description: none 0.02 OrthoFinder output from all 47 species
Smo438556 No alias No description available 0.04 OrthoFinder output from all 47 species
Smo438614 No alias No description available 0.03 OrthoFinder output from all 47 species
Spa_g30700 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g30886 No alias susceptibility factor *(EXA1) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g46291 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08422 No alias susceptibility factor *(EXA1) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g35687 No alias susceptibility factor *(EXA1) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e028423_P003 Zm00001e028423 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Zm00001e028424_P001 Zm00001e028424 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003169 GYF 537 581
No external refs found!