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  5. Solyc04g079740.3.1

Solyc04g079740.3.1 (Solyc04g079740)


Aliases : Solyc04g079740

Description : no hits & (original description: none)


Gene families : OG0007436 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007436_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g079740.3.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AT1G48460 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.05 OrthoFinder output from all 47 species
Ala_g11612 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0093.g043233 No alias not classified & original description: CDS=140-1336 0.07 OrthoFinder output from all 47 species
Cba_g08869 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.12G033600.1 Ceric.12G033600 not classified & original description: pacid=50601734... 0.06 OrthoFinder output from all 47 species
GSVIVT01009618001 No alias No description available 0.05 OrthoFinder output from all 47 species
Gb_14718 No alias no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Len_g58119 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g09265 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0004797 thymidine kinase activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
MF GO:0019136 deoxynucleoside kinase activity IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
MF GO:0019206 nucleoside kinase activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!