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  5. Solyc04g079130.2.1

Solyc04g079130.2.1 (Solyc04g079130)


Aliases : Solyc04g079130

Description : transcription factor (REM)


Gene families : OG0000663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000663_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g079130.2.1
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00115450 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.05 OrthoFinder output from all 47 species
AT3G19184 No alias AP2/B3-like transcriptional factor family protein 0.03 OrthoFinder output from all 47 species
AT5G42700 No alias AP2/B3-like transcriptional factor family protein 0.04 OrthoFinder output from all 47 species
AT5G58280 No alias AP2/B3-like transcriptional factor family protein 0.13 OrthoFinder output from all 47 species
Adi_g052583 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g37039 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g04057 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g28493 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Als_g15351 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Als_g51859 No alias REM-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g06897 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g07732 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g22457 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g25439 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g36068 No alias REM-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Aspi01Gene04981.t1 Aspi01Gene04981 REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene61918.t1 Aspi01Gene61918 REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g03895 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G084400.1 Ceric.02G084400 REM-type transcription factor & original description:... 0.07 OrthoFinder output from all 47 species
Ceric.07G043800.1 Ceric.07G043800 REM-type transcription factor & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.14G017400.1 Ceric.14G017400 REM-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.35G050300.1 Ceric.35G050300 REM-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.38G010700.1 Ceric.38G010700 REM-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g15058 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g41437 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43688 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g25035 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007552001 No alias B3 domain-containing protein Os01g0905400 OS=Oryza... 0.01 OrthoFinder output from all 47 species
GSVIVT01009519001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
GSVIVT01022143001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
GSVIVT01024536001 No alias RNA biosynthesis.transcriptional activation.B3... 0.01 OrthoFinder output from all 47 species
GSVIVT01031761001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
Gb_07025 No alias transcription factor (REM) 0.07 OrthoFinder output from all 47 species
Gb_35990 No alias transcription factor (REM) 0.06 OrthoFinder output from all 47 species
LOC_Os01g67830.1 LOC_Os01g67830 B3 domain-containing protein Os01g0905400 OS=Oryza... 0.03 OrthoFinder output from all 47 species
LOC_Os03g08620.1 LOC_Os03g08620 transcription factor (REM) 0.1 OrthoFinder output from all 47 species
Len_g01795 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Len_g55690 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Len_g56640 No alias REM-type transcription factor & original description: none 0.09 OrthoFinder output from all 47 species
Lfl_g04121 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g28691 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g29370 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10433064g0010 No alias transcription factor (REM) 0.08 OrthoFinder output from all 47 species
MA_175090g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_430451g0010 No alias no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Mp2g08790.1 No alias transcription factor (REM) 0.08 OrthoFinder output from all 47 species
Msp_g09553 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g36795 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g44971 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g08674 No alias REM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g34487 No alias REM-type transcription factor & original description: none 0.08 OrthoFinder output from all 47 species
Nbi_g35599 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g39771 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Ore_g28568 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c2_5990V3.1 Pp3c2_5990 AP2/B3-like transcriptional factor family protein 0.01 OrthoFinder output from all 47 species
Ppi_g01929 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g11582 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g11583 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g14471 No alias REM-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004736 No alias REM-type transcription factor & original description: CDS=35-988 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0085.g018379 No alias REM-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Sam_g14184 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g48173 No alias REM-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Smo424732 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
Spa_g00422 No alias REM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g03459 No alias REM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g12989 No alias REM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g49592 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g56976 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g00720 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g11017 No alias REM-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g29854 No alias REM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Zm00001e000624_P003 Zm00001e000624 transcription factor (REM) 0.07 OrthoFinder output from all 47 species
Zm00001e018925_P002 Zm00001e018925 B3 domain-containing protein Os01g0905400 OS=Oryza... 0.01 OrthoFinder output from all 47 species
Zm00001e020584_P001 Zm00001e020584 transcription factor (REM) 0.09 OrthoFinder output from all 47 species
Zm00001e021364_P001 Zm00001e021364 B3 domain-containing protein Os11g0197600 OS=Oryza... 0.03 OrthoFinder output from all 47 species
Zm00001e031956_P001 Zm00001e031956 transcription factor (REM) 0.03 OrthoFinder output from all 47 species
Zm00001e040028_P004 Zm00001e040028 transcription factor (REM) 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004866 endopeptidase inhibitor activity IEP HCCA
MF GO:0004867 serine-type endopeptidase inhibitor activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030414 peptidase inhibitor activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0061134 peptidase regulator activity IEP HCCA
MF GO:0061135 endopeptidase regulator activity IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 129 215
No external refs found!