Solyc04g078210.3.1 (APUM12, PUM12, Solyc04g078210)

Aliases : APUM12, PUM12, Solyc04g078210

Description : Pumilio homolog 12 OS=Arabidopsis thaliana (sp|q9lvc3|pum12_arath : 241.0)

Gene families : OG0000858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000858_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc04g078210.3.1
Cluster	HCCA: Cluster_78

Target	Alias	Description	ECC score	Gene Family Method
Aev_g16430	APUM12, PUM12	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g41521	APUM12, PUM12	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g08774	PUM7, APUM7	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g02347	PUM7, APUM7	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g07070	APUM12, PUM12	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0068.g016386	APUM8, PUM8	not classified & original description: CDS=1-2142	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
MF	GO:0030599	pectinesterase activity	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001313	Pumilio_RNA-bd_rpt	385	407
IPR001313	Pumilio_RNA-bd_rpt	422	445
IPR001313	Pumilio_RNA-bd_rpt	244	271

External Links

No external refs found!