Solyc04g077210.3.1 (BP, BP1, KNAT1, Solyc04g077210)


Aliases : BP, BP1, KNAT1, Solyc04g077210

Description : transcription factor (KNOX)


Gene families : OG0000252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g077210.3.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00026p00162850 KNAT3,... RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
AMTR_s00045p00169620 KNAT6, KNAT6L,... RNA biosynthesis.transcriptional activation.HB... 0.05 OrthoFinder output from all 47 species
AT1G62360 BUM1, SHL, STM,... KNOX/ELK homeobox transcription factor 0.03 OrthoFinder output from all 47 species
AT1G70510 KNAT2, ATK1 KNOTTED-like from Arabidopsis thaliana 2 0.12 OrthoFinder output from all 47 species
AT4G08150 BP, BP1, KNAT1 KNOTTED-like from Arabidopsis thaliana 0.09 OrthoFinder output from all 47 species
AT5G25220 KNAT3 KNOTTED1-like homeobox gene 3 0.04 OrthoFinder output from all 47 species
Adi_g060986 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g08817 KNAT3 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g70104 KNAT3 KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene56442.t2 KNAT3, Aspi01Gene56442 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g20746 KNAT4 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.04G064800.1 BUM1, SHL, STM,... KNOX-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ceric.10G031700.1 KNAT3, Ceric.10G031700 KNOX-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Ceric.13G020400.1 KNAT3, Ceric.13G020400 KNOX-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Dcu_g23862 KNAT4 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g06109 BP, BP1, KNAT1 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07800 KNAT3 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01004811001 BUM1, SHL, STM,... RNA biosynthesis.transcriptional activation.HB... 0.05 OrthoFinder output from all 47 species
GSVIVT01009273001 BP, BP1, KNAT1 RNA biosynthesis.transcriptional activation.HB... 0.04 OrthoFinder output from all 47 species
GSVIVT01013790001 KNAT6, KNAT6L, KNAT6S RNA biosynthesis.transcriptional activation.HB... 0.07 OrthoFinder output from all 47 species
GSVIVT01019880001 KNAT7, IXR11 RNA biosynthesis.transcriptional activation.HB... 0.03 OrthoFinder output from all 47 species
GSVIVT01031241001 KNAT6, KNAT6L, KNAT6S RNA biosynthesis.transcriptional activation.HB... 0.06 OrthoFinder output from all 47 species
GSVIVT01035921001 KNAT3 RNA biosynthesis.transcriptional activation.HB... 0.02 OrthoFinder output from all 47 species
Gb_00573 BUM1, SHL, STM,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
Gb_10887 BP, BP1, KNAT1 transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
LOC_Os03g03164.2 KNAT7, IXR11,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
LOC_Os05g03884.1 KNAT6, KNAT6L,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
LOC_Os07g03770.1 BP, BP1, KNAT1,... transcription factor (KNOX) 0.07 OrthoFinder output from all 47 species
Len_g00731 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_9556g0010 BP, BP1, KNAT1 transcription factor (KNOX) 0.04 OrthoFinder output from all 47 species
Pnu_g20569 KNAT3 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c19_5610V3.1 Pp3c19_5610 No annotation 0.01 OrthoFinder output from all 47 species
Pp3c19_5620V3.1 BP, BP1, KNAT1,... KNOTTED-like from Arabidopsis thaliana 2 0.01 OrthoFinder output from all 47 species
Pp3c21_10320V3.1 BUM1, SHL, STM,... KNOTTED-like from Arabidopsis thaliana 2 0.01 OrthoFinder output from all 47 species
Ppi_g10499 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g15325 KNAT4 KNOX-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g16367 KNAT3 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0101.g019792 KNAT7, IXR11 not classified & original description: CDS=1-462 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0250.g026748 KNAT3 KNOX-type transcription factor & original description: CDS=1-885 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0250.g026749 KNAT3 not classified & original description: CDS=1-780 0.03 OrthoFinder output from all 47 species
Sam_g35965 No alias KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36645 No alias KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Solyc05g005090.4.1 KNAT6, KNAT6L,... transcription factor (KNOX) 0.06 OrthoFinder output from all 47 species
Solyc12g010410.3.1 KNAT4, Solyc12g010410 transcription factor (KNOX) 0.05 OrthoFinder output from all 47 species
Spa_g22911 KNAT3 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g45614 KNAT4 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g45916 KNAT3 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e005547_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.06 OrthoFinder output from all 47 species
Zm00001e011538_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.07 OrthoFinder output from all 47 species
Zm00001e013853_P001 KNAT3, Zm00001e013853 transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
Zm00001e017489_P001 KNAT6, KNAT6L,... transcription factor (KNOX) 0.09 OrthoFinder output from all 47 species
Zm00001e027562_P001 KNAT6, KNAT6L,... transcription factor (KNOX) 0.09 OrthoFinder output from all 47 species
Zm00001e029453_P001 KNAT6, KNAT6L,... transcription factor (KNOX) 0.07 OrthoFinder output from all 47 species
Zm00001e032761_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
Zm00001e039044_P001 KNAT7, IXR11,... transcription factor (KNOX) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0008289 lipid binding IEP HCCA
MF GO:0015267 channel activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR005540 KNOX1 93 135
IPR008422 Homeobox_KN_domain 276 315
IPR005541 KNOX2 147 192
IPR005539 ELK_dom 236 257
No external refs found!