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  5. Solyc04g072660.4.1

Solyc04g072660.4.1 (Solyc04g072660)


Aliases : Solyc04g072660

Description : component RPL30 of LSU proteome component


Gene families : OG0000968 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000968_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g072660.4.1
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00101p00066400 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
AT1G77940 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.17 OrthoFinder output from all 47 species
AT3G18740 No alias Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.19 OrthoFinder output from all 47 species
Adi_g019990 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Adi_g051341 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Adi_g104467 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ala_g12139 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Ala_g33421 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Aob_g03904 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aob_g13899 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g17201 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Aop_g17616 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g23120 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Aop_g69765 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Aspi01Gene70271.t1 Aspi01Gene70271 component *(eL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Cba_g07807 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Cba_g77370 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.21G027700.1 Ceric.21G027700 component *(eL30) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ceric.31G042300.1 Ceric.31G042300 component *(eL30) of large ribosomal-subunit (LSU)... 0.13 OrthoFinder output from all 47 species
Ceric.36G058900.1 Ceric.36G058900 component *(eL30) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001164.6 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 OrthoFinder output from all 47 species
Cre10.g420750 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.27 OrthoFinder output from all 47 species
Dac_g42615 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Dcu_g06686 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.14 OrthoFinder output from all 47 species
Dde_g34188 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ehy_g26814 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01022191001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.2 OrthoFinder output from all 47 species
GSVIVT01032102001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.16 OrthoFinder output from all 47 species
Gb_02409 No alias component RPL30 of LSU proteome component 0.18 OrthoFinder output from all 47 species
Gb_13527 No alias component RPL30 of LSU proteome component 0.06 OrthoFinder output from all 47 species
LOC_Os01g16890.1 LOC_Os01g16890 component RPL30 of LSU proteome component 0.2 OrthoFinder output from all 47 species
LOC_Os01g59730.1 LOC_Os01g59730 component RPL30 of LSU proteome component 0.07 OrthoFinder output from all 47 species
LOC_Os05g41110.1 LOC_Os05g41110 component RPL30 of LSU proteome component 0.11 OrthoFinder output from all 47 species
Len_g15495 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Len_g54169 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Lfl_g14124 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Lfl_g14157 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Lfl_g21475 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
MA_6354g0010 No alias component RPL30 of LSU proteome component 0.14 OrthoFinder output from all 47 species
Mp7g01690.1 No alias component RPL30 of LSU proteome component 0.26 OrthoFinder output from all 47 species
Msp_g41110 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Nbi_g33200 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ore_g36755 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Pir_g57848 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pp3c12_9290V3.1 Pp3c12_9290 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.08 OrthoFinder output from all 47 species
Pp3c16_10400V3.1 Pp3c16_10400 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.1 OrthoFinder output from all 47 species
Pp3c25_9320V3.1 Pp3c25_9320 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.05 OrthoFinder output from all 47 species
Pp3c4_15480V3.1 Pp3c4_15480 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.11 OrthoFinder output from all 47 species
Ppi_g07992 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ppi_g23635 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ppi_g33788 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Sam_g00684 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g11494 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g38074 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g41445 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Sam_g41910 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g42031 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Smo19071 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.15 OrthoFinder output from all 47 species
Spa_g00831 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Spa_g39919 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Tin_g05827 No alias component *(eL30) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Zm00001e013242_P001 Zm00001e013242 component RPL30 of LSU proteome component 0.03 OrthoFinder output from all 47 species
Zm00001e025492_P001 Zm00001e025492 component RPL30 of LSU proteome component 0.09 OrthoFinder output from all 47 species
Zm00001e031987_P001 Zm00001e031987 component RPL30 of LSU proteome component 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 14 106
No external refs found!