Solyc04g072550.3.1 (Solyc04g072550)

Aliases : Solyc04g072550

Description : transcription factor (mTERF)

Gene families : OG0000165 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000165_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc04g072550.3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00224530	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
AMTR_s00045p00036230	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
AMTR_s00060p00059830	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
AMTR_s00066p00157030	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.04	OrthoFinder output from all 47 species
AMTR_s00066p00157220	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.04	OrthoFinder output from all 47 species
AMTR_s00084p00087230	PTAC15,...	RNA biosynthesis.organelle...	0.04	OrthoFinder output from all 47 species
AMTR_s00126p00036100	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
AMTR_s00126p00036560	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
AMTR_s00612p00010480	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
AMTR_s01360p00009540	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.04	OrthoFinder output from all 47 species
AT1G61980	No alias	Mitochondrial transcription termination factor family protein	0.03	OrthoFinder output from all 47 species
Azfi_s0045.g030001	EMB93, SOLDAT10	mTERF-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Dcu_g24025	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Gb_07257	PTAC15	TAC15 cofactor of plastid-encoded RNA polymerase....	0.02	OrthoFinder output from all 47 species
Gb_13847	PTAC15	TAC15 cofactor of plastid-encoded RNA polymerase....	0.03	OrthoFinder output from all 47 species
Gb_15298	No alias	transcription factor (mTERF)	0.04	OrthoFinder output from all 47 species
Gb_15878	No alias	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
Gb_26213	No alias	transcription factor (mTERF)	0.04	OrthoFinder output from all 47 species
Gb_31439	No alias	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
LOC_Os06g12070.1	LOC_Os06g12070	transcription factor (mTERF)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
CC	GO:0005856	cytoskeleton	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003690	MTERF	48	351

External Links

No external refs found!

Solyc04g072550.3.1 (Solyc04g072550)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation