Solyc04g072520.3.1 (Solyc04g072520)

Aliases : Solyc04g072520

Description : transcription factor (mTERF)

Gene families : OG0000165 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000165_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc04g072520.3.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00235420	EMB93, SOLDAT10,...	RNA biosynthesis.organelle...	0.05	OrthoFinder output from all 47 species
AMTR_s00038p00175390	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
AMTR_s00084p00087230	PTAC15,...	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
AMTR_s00871p00002780	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
AMTR_s01293p00010460	evm_27.TU.AmTr_v1...	No description available	0.03	OrthoFinder output from all 47 species
AT1G62010	No alias	Mitochondrial transcription termination factor family protein	0.02	OrthoFinder output from all 47 species
AT1G62085	No alias	Mitochondrial transcription termination factor family protein	0.06	OrthoFinder output from all 47 species
AT1G62110	No alias	Mitochondrial transcription termination factor family protein	0.03	OrthoFinder output from all 47 species
AT1G62150	No alias	Mitochondrial transcription termination factor family protein	0.04	OrthoFinder output from all 47 species
AT3G46950	No alias	Mitochondrial transcription termination factor family protein	0.04	OrthoFinder output from all 47 species
AT5G23930	No alias	Mitochondrial transcription termination factor family protein	0.05	OrthoFinder output from all 47 species
Aev_g11948	PTAC15	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g21849	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g48506	No alias	mTERF-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Aob_g41383	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g10671	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Gb_07257	PTAC15	TAC15 cofactor of plastid-encoded RNA polymerase....	0.06	OrthoFinder output from all 47 species
Gb_12368	No alias	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
Gb_26176	No alias	transcription factor (mTERF)	0.04	OrthoFinder output from all 47 species
Gb_26213	No alias	transcription factor (mTERF)	0.04	OrthoFinder output from all 47 species
LOC_Os05g33460.2	LOC_Os05g33460	transcription factor (mTERF)	0.05	OrthoFinder output from all 47 species
LOC_Os06g12110.1	LOC_Os06g12110	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
LOC_Os07g24090.1	LOC_Os07g24090	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
MA_122549g0010	No alias	transcription factor (mTERF)	0.04	OrthoFinder output from all 47 species
MA_31885g0010	No alias	transcription factor (mTERF)	0.04	OrthoFinder output from all 47 species
MA_33244g0010	No alias	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
Ore_g26624	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Solyc04g072530.2.1	Solyc04g072530	transcription factor (mTERF)	0.04	OrthoFinder output from all 47 species
Zm00001e018154_P001	Zm00001e018154	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
Zm00001e022322_P001	Zm00001e022322	transcription factor (mTERF)	0.05	OrthoFinder output from all 47 species
Zm00001e027097_P001	Zm00001e027097	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
Zm00001e031638_P001	Zm00001e031638	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003848	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity	IEP	HCCA
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	HCCA
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	HCCA
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	HCCA
MF	GO:0016778	diphosphotransferase activity	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0042398	cellular modified amino acid biosynthetic process	IEP	HCCA
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	HCCA
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003690	MTERF	194	354
IPR003690	MTERF	44	233

External Links

No external refs found!

Solyc04g072520.3.1 (Solyc04g072520)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation