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  5. Solyc04g072043.1.1

Solyc04g072043.1.1 (PAB5, Solyc04g072043)


Aliases : PAB5, Solyc04g072043

Description : mRNA poly-A-tail binding factor (PABP)


Gene families : OG0000326 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000326_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g072043.1.1
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AT2G36660 PAB7 poly(A) binding protein 7 0.03 OrthoFinder output from all 47 species
AT3G16380 PAB6 poly(A) binding protein 6 0.04 OrthoFinder output from all 47 species
Azfi_s0280.g062302 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01013699001 PAB3 Protein biosynthesis.translation initiation.mRNA... 0.03 OrthoFinder output from all 47 species
Zm00001e037390_P001 PAB5, Zm00001e037390 mRNA poly-A-tail binding factor (PABP) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
InterPro domains Description Start Stop
IPR002004 PABP_HYD 565 631
IPR000504 RRM_dom 50 119
IPR000504 RRM_dom 331 398
IPR000504 RRM_dom 228 296
IPR000504 RRM_dom 138 206
No external refs found!