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  5. Solyc04g058190.3.1

Solyc04g058190.3.1 (Solyc04g058190)


Aliases : Solyc04g058190

Description : PHD finger protein EHD3 OS=Oryza sativa subsp. japonica (sp|q6zjm9|ehd3_orysj : 217.0)


Gene families : OG0002848 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002848_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g058190.3.1
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Ceric.34G029600.1 Ceric.34G029600 not classified & original description: pacid=50623617... 0.03 OrthoFinder output from all 47 species
Gb_06677 No alias PHD finger protein EHD3 OS=Oryza sativa subsp. japonica... 0.09 OrthoFinder output from all 47 species
Gb_34287 ATMBD9, MBD9 PHD finger protein EHD3 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
MA_10431108g0010 No alias PHD finger protein EHD3 OS=Oryza sativa subsp. japonica... 0.04 OrthoFinder output from all 47 species
Ore_g26659 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g42294 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011282 ORC1B, ATORC1B, UNE13 not classified & original description: CDS=260-3130 0.03 OrthoFinder output from all 47 species
Spa_g51133 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g56620 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Zm00001e021897_P001 Zm00001e021897 PHD finger protein EHD3 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 329 375
IPR019787 Znf_PHD-finger 488 534
No external refs found!