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Aliases : Solyc04g057990
Description : RNA degradation surveillance factor (SOP1)
Gene families : OG0004256 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004256_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G21580 | No alias | Zinc finger C-x8-C-x5-C-x3-H type family protein | 0.09 | OrthoFinder output from all 47 species | |
| Adi_g086844 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.06 | OrthoFinder output from all 47 species | |
| Aev_g21965 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g33279 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.05 | OrthoFinder output from all 47 species | |
| Aop_g14012 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.23G086900.1 | Ceric.23G086900 | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.06 | OrthoFinder output from all 47 species | |
| GSVIVT01008802001 | No alias | RNA processing.RNA decay.exosome complex.associated... | 0.08 | OrthoFinder output from all 47 species | |
| LOC_Os06g43120.1 | LOC_Os06g43120 | RNA degradation surveillance factor (SOP1) | 0.13 | OrthoFinder output from all 47 species | |
| Len_g41224 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g16590 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.04 | OrthoFinder output from all 47 species | |
| MA_140138g0020 | No alias | RNA degradation surveillance factor (SOP1) | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g44276 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g15166 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.05 | OrthoFinder output from all 47 species | |
| Ppi_g15340 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g22203 | No alias | component *(SOP1) of PAXT RNA-exosome-activation complex... | 0.06 | OrthoFinder output from all 47 species | |
| Zm00001e037509_P004 | Zm00001e037509 | RNA degradation surveillance factor (SOP1) | 0.04 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
| MF | GO:0008270 | zinc ion binding | IEP | HCCA |
| BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
| BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043169 | cation binding | IEP | HCCA |
| MF | GO:0046872 | metal ion binding | IEP | HCCA |
| MF | GO:0046914 | transition metal ion binding | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |