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  5. Solyc04g056380.3.1

Solyc04g056380.3.1 (Solyc04g056380)


Aliases : Solyc04g056380

Description : lipid droplet biogenesis factor (SEIPIN)


Gene families : OG0002303 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002303_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g056380.3.1
Cluster HCCA: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
AT5G16460 No alias Putative adipose-regulatory protein (Seipin) 0.19 OrthoFinder output from all 47 species
GSVIVT01019108001 No alias Lipid metabolism.lipid bodies-associated... 0.04 OrthoFinder output from all 47 species
Gb_35862 No alias lipid droplet biogenesis factor (SEIPIN) 0.05 OrthoFinder output from all 47 species
LOC_Os12g05330.1 LOC_Os12g05330 lipid droplet biogenesis factor (SEIPIN) 0.06 OrthoFinder output from all 47 species
Lfl_g20834 No alias lipid droplet biogenesis factor *(SEIPIN) & original... 0.02 OrthoFinder output from all 47 species
Msp_g24033 No alias lipid droplet biogenesis factor *(SEIPIN) & original... 0.02 OrthoFinder output from all 47 species
Msp_g48515 No alias lipid droplet biogenesis factor *(SEIPIN) & original... 0.02 OrthoFinder output from all 47 species
Pir_g64472 No alias lipid droplet biogenesis factor *(SEIPIN) & original... 0.02 OrthoFinder output from all 47 species
Tin_g07308 No alias lipid droplet biogenesis factor *(SEIPIN) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0019915 lipid storage IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003872 6-phosphofructokinase activity IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0004356 glutamate-ammonia ligase activity IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006471 obsolete protein ADP-ribosylation IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006541 glutamine metabolic process IEP HCCA
BP GO:0006542 glutamine biosynthetic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008443 phosphofructokinase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016211 ammonia ligase activity IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP HCCA
MF GO:0019200 carbohydrate kinase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR009617 Seipin 119 316
No external refs found!