Solyc04g055120.3.1 (CTS, ACN2, PED3,...)

Aliases : CTS, ACN2, PED3, AtABCD1, PXA1, Solyc04g055120

Description : peroxisomal fatty acid transporter (PXA1). subfamily ABCD transporter

Gene families : OG0003180 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003180_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc04g055120.3.1
Cluster	HCCA: Cluster_33

Target	Alias	Description	ECC score	Gene Family Method
AT4G39850	CTS, ACN2, PED3,...	peroxisomal ABC transporter 1	0.09	OrthoFinder output from all 47 species
Adi_g020091	CTS, ACN2, PED3,...	subfamily ABCD transporter & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g11144	CTS, ACN2, PED3,...	subfamily ABCD transporter & original description: none	0.07	OrthoFinder output from all 47 species
Ala_g06403	CTS, ACN2, PED3,...	subfamily ABCD transporter & original description: none	0.04	OrthoFinder output from all 47 species
Als_g30641	CTS, ACN2, PED3,...	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Als_g33196	CTS, ACN2, PED3,...	subfamily ABCD transporter & original description: none	0.02	OrthoFinder output from all 47 species
Als_g56890	CTS, ACN2, PED3,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene62794.t1	CTS, ACN2, PED3,...	subfamily ABCD transporter & original description: none	0.05	OrthoFinder output from all 47 species
Azfi_s0048.g030599	CTS, ACN2, PED3,...	subfamily ABCD transporter & original description: CDS=293-4504	0.04	OrthoFinder output from all 47 species
Dcu_g08997	CTS, ACN2, PED3,...	subfamily ABCD transporter & original description: none	0.03	OrthoFinder output from all 47 species
Len_g16771	CTS, ACN2, PED3,...	subfamily ABCD transporter & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g02451	CTS, ACN2, PED3,...	subfamily ABCD transporter & original description: none	0.06	OrthoFinder output from all 47 species
MA_10435403g0010	CTS, ACN2, PED3,...	peroxisomal fatty acid transporter (PXA1). subfamily...	0.06	OrthoFinder output from all 47 species
MA_10437109g0030	CTS, ACN2, PED3,...	subfamily ABCD transporter	0.04	OrthoFinder output from all 47 species
MA_526197g0010	CTS, ACN2, PED3,...	ABC transporter D family member 1 OS=Arabidopsis...	0.06	OrthoFinder output from all 47 species
Mp6g16850.1	CTS, ACN2, PED3,...	peroxisomal fatty acid transporter (PXA1). subfamily...	0.02	OrthoFinder output from all 47 species
Nbi_g06821	CTS, ACN2, PED3,...	subfamily ABCD transporter & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g36184	No alias	subfamily ABCD transporter & original description: none	0.04	OrthoFinder output from all 47 species
Smo439220	CTS, ACN2, PED3,...	Solute transport.primary active transport.ABC...	0.03	OrthoFinder output from all 47 species
Tin_g20110	CTS, ACN2, PED3,...	subfamily ABCD transporter & original description: none	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004540	ribonuclease activity	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	463	608
IPR011527	ABC1_TM_dom	747	1011
IPR011527	ABC1_TM_dom	91	359
IPR003439	ABC_transporter-like_ATP-bd	1113	1275

External Links

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Solyc04g055120.3.1 (CTS, ACN2, PED3,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation