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  5. Solyc04g054490.3.1

Solyc04g054490.3.1 (Solyc04g054490)


Aliases : Solyc04g054490

Description : pepsin-type protease


Gene families : OG0002524 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002524_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g054490.3.1
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
AT3G51330 No alias Eukaryotic aspartyl protease family protein 0.04 OrthoFinder output from all 47 species
AT5G10080 No alias Eukaryotic aspartyl protease family protein 0.03 OrthoFinder output from all 47 species
Aop_g09892 No alias A1-class (Pepsin) protease & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g58912 No alias A1-class (Pepsin) protease & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.04G070500.1 Ceric.04G070500 A1-class (Pepsin) protease & original description:... 0.03 OrthoFinder output from all 47 species
Dcu_g41849 No alias A1-class (Pepsin) protease & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g13374 No alias A1-class (Pepsin) protease & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g05013 No alias A1-class (Pepsin) protease & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os09g37012.1 LOC_Os09g37012 pepsin-type protease 0.04 OrthoFinder output from all 47 species
Msp_g00602 No alias A1-class (Pepsin) protease & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0171.g024394 No alias A1-class (Pepsin) protease & original description: CDS=1-1425 0.02 OrthoFinder output from all 47 species
Sam_g39415 No alias A1-class (Pepsin) protease & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e023878_P004 Zm00001e023878 pepsin-type protease 0.05 OrthoFinder output from all 47 species
Zm00001e029902_P001 Zm00001e029902 pepsin-type protease 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR032799 TAXi_C 324 449
IPR032861 TAXi_N 105 287
No external refs found!