1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc04g051200.2.1

Solyc04g051200.2.1 (Solyc04g051200)


Aliases : Solyc04g051200

Description : UDP-L-arabinose mutase


Gene families : OG0001238 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001238_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g051200.2.1

Target Alias Description ECC score Gene Family Method Actions
AT5G16510 No alias Alpha-1,4-glucan-protein synthase family protein 0.04 OrthoFinder output from all 47 species
Als_g05517 ATRGP1, RGP1 UDP-L-arabinose mutase & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g02782 RGP3, RGP UDP-L-arabinose mutase & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g04276 ATRGP1, RGP1 UDP-L-arabinose mutase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene36265.t1 RGP3, RGP,... UDP-L-arabinose mutase & original description: none 0.03 OrthoFinder output from all 47 species
Cre13.g565800 ATRGP1, RGP1 Carbohydrate metabolism.nucleotide sugar... 0.04 OrthoFinder output from all 47 species
LOC_Os03g40270.1 RGP2, ATRGP2,... UDP-L-arabinose mutase 0.04 OrthoFinder output from all 47 species
LOC_Os04g56520.2 LOC_Os04g56520 UDP-L-arabinose mutase 0.03 OrthoFinder output from all 47 species
Lfl_g34861 ATRGP1, RGP1 UDP-L-arabinose mutase & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g15549 ATRGP1, RGP1 UDP-L-arabinose mutase & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0201.g025620 ATRGP1, RGP1 UDP-L-arabinose mutase & original description: CDS=1-876 0.03 OrthoFinder output from all 47 species
Smo140071 ATRGP1, RGP1 Carbohydrate metabolism.nucleotide sugar... 0.03 OrthoFinder output from all 47 species
Smo76446 RGP2, ATRGP2 Carbohydrate metabolism.nucleotide sugar... 0.02 OrthoFinder output from all 47 species
Solyc02g065740.3.1 ATRGP1, RGP1,... UDP-L-arabinose mutase 0.03 OrthoFinder output from all 47 species
Solyc02g089170.4.1 ATRGP1, RGP1,... UDP-L-arabinose mutase 0.03 OrthoFinder output from all 47 species
Tin_g40978 RGP3, RGP UDP-L-arabinose mutase & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e012459_P003 RGP2, ATRGP2,... UDP-L-arabinose mutase 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006098 pentose-phosphate shunt IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006739 NADP metabolic process IEP HCCA
BP GO:0006740 NADPH regeneration IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0019362 pyridine nucleotide metabolic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0046496 nicotinamide nucleotide metabolic process IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0051156 glucose 6-phosphate metabolic process IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072524 pyridine-containing compound metabolic process IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR037595 RGP_fam 7 345
No external refs found!