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  5. Solyc04g050540.4.1

Solyc04g050540.4.1 (PTAC3, Solyc04g050540)


Aliases : PTAC3, Solyc04g050540

Description : PAP1/TAC3 cofactor of plastid-encoded RNA polymerase


Gene families : OG0004426 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004426_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g050540.4.1
Cluster HCCA: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
AT3G04260 PTAC3 plastid transcriptionally active 3 0.2 OrthoFinder output from all 47 species
Aev_g41836 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.02 OrthoFinder output from all 47 species
Ala_g04595 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.03 OrthoFinder output from all 47 species
Als_g09362 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.02 OrthoFinder output from all 47 species
Aop_g10889 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.04 OrthoFinder output from all 47 species
Azfi_s0371.g067120 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.03 OrthoFinder output from all 47 species
Cba_g34156 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.04 OrthoFinder output from all 47 species
Ceric.39G010500.1 PTAC3, Ceric.39G010500 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.05 OrthoFinder output from all 47 species
Cre12.g497350 No alias No description available 0.03 OrthoFinder output from all 47 species
Dcu_g07704 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.04 OrthoFinder output from all 47 species
Dde_g09087 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.02 OrthoFinder output from all 47 species
Ehy_g16824 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.03 OrthoFinder output from all 47 species
GSVIVT01026351001 PTAC3 RNA biosynthesis.organelle machineries.RNA polymerase... 0.22 OrthoFinder output from all 47 species
Gb_05601 PTAC3 PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species
Gb_27856 PTAC3 PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species
LOC_Os10g32540.1 PTAC3, LOC_Os10g32540 PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.14 OrthoFinder output from all 47 species
Lfl_g12563 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.06 OrthoFinder output from all 47 species
MA_10433475g0010 PTAC3 PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.03 OrthoFinder output from all 47 species
MA_7597000g0010 PTAC3 PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.07 OrthoFinder output from all 47 species
Mp2g04680.1 PTAC3 PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.1 OrthoFinder output from all 47 species
Msp_g16208 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.04 OrthoFinder output from all 47 species
Ore_g37614 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.07 OrthoFinder output from all 47 species
Pir_g19801 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.03 OrthoFinder output from all 47 species
Smo164431 PTAC3 RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder output from all 47 species
Spa_g08017 PTAC3 cofactor of plastid-encoded RNA polymerase *(PAP1/TAC3)... 0.03 OrthoFinder output from all 47 species
Zm00001e004642_P001 PTAC3, Zm00001e004642 PAP1/TAC3 cofactor of plastid-encoded RNA polymerase 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003034 SAP_dom 534 566
No external refs found!