Aliases : IBM1, Solyc04g049140
Description : histone demethylase (KDM3). transcription factor (JUMONJI)
Gene families : OG0000328 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000328_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00037p00169980 | evm_27.TU.AmTr_v1... | RNA biosynthesis.transcriptional activation.JUMONJI... | 0.03 | OrthoFinder output from all 47 species | |
AMTR_s00072p00101130 | evm_27.TU.AmTr_v1... | RNA biosynthesis.transcriptional activation.JUMONJI... | 0.02 | OrthoFinder output from all 47 species | |
Adi_g001620 | No alias | histone demethylase *(KDM3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Adi_g020057 | No alias | histone demethylase *(KDM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Adi_g086369 | No alias | histone demethylase *(KDM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Adi_g109477 | No alias | histone demethylase *(KDM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ala_g11073 | No alias | histone demethylase *(KDM3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aob_g20572 | No alias | histone demethylase *(KDM3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aop_g19024 | No alias | histone demethylase *(KDM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Cba_g31854 | No alias | histone demethylase *(KDM3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Dcu_g12281 | No alias | histone demethylase *(KDM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g25444 | No alias | auxiliary component *(JMJ24) of COMPASS histone... | 0.02 | OrthoFinder output from all 47 species | |
Dde_g12667 | No alias | histone demethylase *(KDM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Dde_g18399 | No alias | histone demethylase *(KDM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01026208001 | No alias | RNA biosynthesis.transcriptional activation.JUMONJI... | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os02g01940.1 | LOC_Os02g01940 | histone demethylase (KDM3). transcription factor (JUMONJI) | 0.05 | OrthoFinder output from all 47 species | |
LOC_Os07g37140.1 | LOC_Os07g37140 | histone demethylase (KDM3) | 0.02 | OrthoFinder output from all 47 species | |
Len_g08738 | No alias | histone demethylase *(KDM3) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Lfl_g35782 | No alias | histone demethylase *(KDM3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
MA_42677g0010 | No alias | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
MA_8576373g0010 | No alias | no hits & (original description: none) | 0.02 | OrthoFinder output from all 47 species | |
MA_97681g0010 | No alias | histone demethylase (KDM3). transcription factor (JUMONJI) | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g13618 | No alias | histone demethylase *(KDM3) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Nbi_g19186 | No alias | histone demethylase *(KDM3) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Pir_g05001 | No alias | histone demethylase *(KDM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g04006 | No alias | histone demethylase *(KDM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Sam_g40489 | No alias | histone demethylase *(KDM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Spa_g48969 | No alias | histone demethylase *(KDM3) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e004958_P004 | Zm00001e004958 | histone demethylase (KDM3). transcription factor (JUMONJI) | 0.01 | OrthoFinder output from all 47 species | |
Zm00001e010541_P001 | Zm00001e010541 | histone demethylase (KDM3) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e023535_P001 | Zm00001e023535 | histone demethylase (KDM3). transcription factor (JUMONJI) | 0.04 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003677 | DNA binding | IEP | HCCA |
MF | GO:0003684 | damaged DNA binding | IEP | HCCA |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
MF | GO:0003906 | DNA-(apurinic or apyrimidinic site) endonuclease activity | IEP | HCCA |
MF | GO:0003950 | NAD+ ADP-ribosyltransferase activity | IEP | HCCA |
MF | GO:0005488 | binding | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006281 | DNA repair | IEP | HCCA |
BP | GO:0006284 | base-excision repair | IEP | HCCA |
BP | GO:0006289 | nucleotide-excision repair | IEP | HCCA |
BP | GO:0006351 | DNA-templated transcription | IEP | HCCA |
BP | GO:0006471 | obsolete protein ADP-ribosylation | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
BP | GO:0009058 | biosynthetic process | IEP | HCCA |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
MF | GO:0016740 | transferase activity | IEP | HCCA |
MF | GO:0016763 | pentosyltransferase activity | IEP | HCCA |
MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | HCCA |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
MF | GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds | IEP | HCCA |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
BP | GO:0032774 | RNA biosynthetic process | IEP | HCCA |
BP | GO:0033554 | cellular response to stress | IEP | HCCA |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | HCCA |
MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR003347 | JmjC_dom | 814 | 914 |
No external refs found! |