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  5. Solyc04g040190.1.1

Solyc04g040190.1.1 (LYC, Solyc04g040190)


Aliases : LYC, Solyc04g040190

Description : lycopene beta cyclase (LCY-b)


Gene families : OG0004073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g040190.1.1
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
Cre08.g358538 LYC Secondary metabolism.terpenoids.terpenoid... 0.05 OrthoFinder output from all 47 species
Ehy_g06810 LYC EC_5.5 intramolecular lyase & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g29048 LYC EC_5.5 intramolecular lyase & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g14458 No alias EC_5.5 intramolecular lyase & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!