Solyc04g026350.3.1 (CEN2, CEN1, ATCEN2,...)


Aliases : CEN2, CEN1, ATCEN2, Solyc04g026350

Description : DNA repair protein (CEN2). centrin component CEN of TREX-2 mRNP trafficking complex


Gene families : OG0001195 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001195_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g026350.3.1
Cluster HCCA: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
AT3G50360 CEN2, CEN1, ATCEN2 centrin2 0.04 OrthoFinder output from all 47 species
Aop_g33333 CEN2 calcium sensor *(CML) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g38419 CEN2 calcium sensor *(CML) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g36586 CEN2 calcium sensor *(CML) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g27907 No alias calcium sensor *(CML) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002048 EF_hand_dom 103 167
IPR002048 EF_hand_dom 31 93
No external refs found!