Solyc04g025290.4.1 (ATPRFB, HCF109, Solyc04g025290)

Aliases : ATPRFB, HCF109, Solyc04g025290

Description : PrfB-type translation peptide chain release factor

Gene families : OG0002101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002101_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc04g025290.4.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00066p00184560	ATPRFB, HCF109,...	Protein biosynthesis.organelle translation...	0.09	OrthoFinder output from all 47 species
AT5G36170	ATPRFB, HCF109	high chlorophyll fluorescent 109	0.03	OrthoFinder output from all 47 species
Adi_g040965	ATPRFB, HCF109	translation peptide chain release factor *(PrfB) &...	0.02	OrthoFinder output from all 47 species
Ala_g01893	ATPRFB, HCF109	translation peptide chain release factor *(PrfB) &...	0.03	OrthoFinder output from all 47 species
Als_g37106	ATPRFB, HCF109	translation peptide chain release factor *(PrfB) &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene23943.t1	ATPRFB, HCF109,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g23243	ATPRFB, HCF109	translation peptide chain release factor *(PrfB) &...	0.03	OrthoFinder output from all 47 species
Ceric.36G013000.1	ATPRFB, HCF109,...	translation peptide chain release factor *(PrfB) &...	0.05	OrthoFinder output from all 47 species
Cre01.g010864	ATPRFB, HCF109	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
Dcu_g09191	ATPRFB, HCF109	translation peptide chain release factor *(PrfB) &...	0.05	OrthoFinder output from all 47 species
Ehy_g09038	ATPRFB, HCF109	translation peptide chain release factor *(PrfB) &...	0.04	OrthoFinder output from all 47 species
Lfl_g12599	ATPRFB, HCF109	translation peptide chain release factor *(PrfB) &...	0.05	OrthoFinder output from all 47 species
MA_10437191g0010	ATPRFB, HCF109	PrfB-type translation peptide chain release factor	0.09	OrthoFinder output from all 47 species
Msp_g44375	ATPRFB, HCF109	translation peptide chain release factor *(PrfB) &...	0.03	OrthoFinder output from all 47 species
Sam_g51819	No alias	translation peptide chain release factor *(PrfB) &...	0.02	OrthoFinder output from all 47 species
Spa_g09555	ATPRFB, HCF109	translation peptide chain release factor *(PrfB) &...	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003747	translation release factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006415	translational termination	IEA	Interproscan
MF	GO:0008079	translation termination factor activity	None	Extended
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022411	cellular component disassembly	None	Extended
BP	GO:0032984	protein-containing complex disassembly	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	HCCA
MF	GO:0008312	7S RNA binding	IEP	HCCA
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0045047	protein targeting to ER	IEP	HCCA
CC	GO:0048500	signal recognition particle	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000352	Pep_chain_release_fac_I	323	431
IPR005139	PCRF	121	311

External Links

No external refs found!

Solyc04g025290.4.1 (ATPRFB, HCF109, Solyc04g025290)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation