Solyc04g024420.3.1 (PBB2, Solyc04g024420)

Aliases : PBB2, Solyc04g024420

Description : component beta type-2 of 26S proteasome

Gene families : OG0004022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004022_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc04g024420.3.1

Target	Alias	Description	ECC score	Gene Family Method
Aop_g04145	PBB2	beta-type-2 component *(PBB) of 26S proteasome &...	0.02	OrthoFinder output from all 47 species
Cre10.g424400	PBB1	Protein degradation.26S proteasome.20S core...	0.01	OrthoFinder output from all 47 species
Dcu_g02516	PBB2	beta-type-2 component *(PBB) of 26S proteasome &...	0.01	OrthoFinder output from all 47 species
Dde_g05731	PBB2	beta-type-2 component *(PBB) of 26S proteasome &...	0.02	OrthoFinder output from all 47 species
GSVIVT01000574001	PBB2	Protein degradation.26S proteasome.20S core...	0.2	OrthoFinder output from all 47 species
LOC_Os05g09490.1	PBB1, LOC_Os05g09490	component beta type-2 of 26S proteasome	0.02	OrthoFinder output from all 47 species
Len_g01148	PBB2	beta-type-2 component *(PBB) of 26S proteasome &...	0.03	OrthoFinder output from all 47 species
MA_10436996g0010	PBB2	component beta type-2 of 26S proteasome	0.02	OrthoFinder output from all 47 species
Mp1g03530.1	PBB2	component beta type-2 of 26S proteasome	0.03	OrthoFinder output from all 47 species
Msp_g07522	PBB2	beta-type-2 component *(PBB) of 26S proteasome &...	0.01	OrthoFinder output from all 47 species
Pir_g00293	PBB2	beta-type-2 component *(PBB) of 26S proteasome &...	0.01	OrthoFinder output from all 47 species
Zm00001e029814_P002	PBB1, Zm00001e029814	component beta type-2 of 26S proteasome	0.03	OrthoFinder output from all 47 species
Zm00001e033186_P001	PBB1, Zm00001e033186	component beta type-2 of 26S proteasome	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004298	threonine-type endopeptidase activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005839	proteasome core complex	IEA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	IEA	Interproscan
MF	GO:0070003	threonine-type peptidase activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001353	Proteasome_sua/b	38	218

External Links

No external refs found!