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  5. Solyc04g016510.3.1

Solyc04g016510.3.1 (EMB2776, LIS, Solyc04g016510)


Aliases : EMB2776, LIS, Solyc04g016510

Description : protein factor PRPF4 of U4/U6 small nuclear ribonucleoprotein particle (snRNP)


Gene families : OG0003984 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003984_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g016510.3.1

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0619.g079557 EMB2776, LIS component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.03 OrthoFinder output from all 47 species
Ceric.09G088700.1 EMB2776, LIS,... component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.02 OrthoFinder output from all 47 species
Cre16.g662800 EMB2776, LIS RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Cre16.g662852 No alias No description available 0.02 OrthoFinder output from all 47 species
Dac_g08551 EMB2776, LIS component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.03 OrthoFinder output from all 47 species
Dcu_g04836 EMB2776, LIS component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.03 OrthoFinder output from all 47 species
GSVIVT01033551001 EMB2776, LIS RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder output from all 47 species
LOC_Os03g23935.1 EMB2776, LIS,... protein factor PRPF4 of U4/U6 small nuclear... 0.04 OrthoFinder output from all 47 species
Ppi_g16601 EMB2776, LIS component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
CC GO:0031011 Ino80 complex IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
CC GO:0070603 SWI/SNF superfamily-type complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0097346 INO80-type complex IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1904949 ATPase complex IEP HCCA
InterPro domains Description Start Stop
IPR014906 PRP4-like 156 184
IPR001680 WD40_repeat 448 482
IPR001680 WD40_repeat 530 567
IPR001680 WD40_repeat 409 440
IPR001680 WD40_repeat 320 357
IPR001680 WD40_repeat 360 398
No external refs found!