Solyc04g009720.1.1 (Solyc04g009720)

Aliases : Solyc04g009720

Description : Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana (sp|q0wmy5|pp365_arath : 319.0)

Gene families : OG0007144 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007144_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc04g009720.1.1
Cluster	HCCA: Cluster_81

Target	Alias	Description	ECC score	Gene Family Method
AT5G04810	No alias	pentatricopeptide (PPR) repeat-containing protein	0.03	OrthoFinder output from all 47 species
Aob_g11599	No alias	trans-splicing factor *(PPR4) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g11518	No alias	trans-splicing factor *(PPR4) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.23G051700.1	Ceric.23G051700	trans-splicing factor *(PPR4) & original description:...	0.02	OrthoFinder output from all 47 species
GSVIVT01034651001	No alias	Pentatricopeptide repeat-containing protein At5g04810,...	0.03	OrthoFinder output from all 47 species
Gb_31763	No alias	Pentatricopeptide repeat-containing protein At5g04810,...	0.03	OrthoFinder output from all 47 species
LOC_Os04g58780.1	LOC_Os04g58780	Pentatricopeptide repeat-containing protein At5g04810,...	0.02	OrthoFinder output from all 47 species
Pir_g08436	No alias	trans-splicing factor *(PPR4) & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	247	274
IPR000504	RRM_dom	114	186
IPR002885	Pentatricopeptide_repeat	278	325

External Links

No external refs found!