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  5. Solyc04g009560.3.1

Solyc04g009560.3.1 (Solyc04g009560)


Aliases : Solyc04g009560

Description : RAB-GTPase-activating protein (RAB-GAP)


Gene families : OG0001869 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001869_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g009560.3.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g022435 No alias Rab GTPase-activating protein & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06613 No alias Rab GTPase-activating protein & original description: none 0.02 OrthoFinder output from all 47 species
Als_g26385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g63656 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0013.g013092 No alias Rab GTPase-activating protein & original description: CDS=1-2967 0.04 OrthoFinder output from all 47 species
Dcu_g46345 No alias Rab GTPase-activating protein & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g14940 No alias Rab GTPase-activating protein & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01032641001 No alias Vesicle trafficking.regulation of membrane tethering and... 0.06 OrthoFinder output from all 47 species
LOC_Os05g38950.1 LOC_Os05g38950 RAB-GTPase-activating protein (RAB-GAP) 0.04 OrthoFinder output from all 47 species
Pir_g11813 No alias Rab GTPase-activating protein & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03980 No alias Rab GTPase-activating protein & original description: none 0.04 OrthoFinder output from all 47 species
Smo89532 No alias Vesicle trafficking.regulation of membrane tethering and... 0.03 OrthoFinder output from all 47 species
Zm00001e019374_P002 Zm00001e019374 RAB-GTPase-activating protein (RAB-GAP) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0003872 6-phosphofructokinase activity IEP HCCA
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
MF GO:0008443 phosphofructokinase activity IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP HCCA
BP GO:0015780 nucleotide-sugar transmembrane transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0019200 carbohydrate kinase activity IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:1901264 carbohydrate derivative transport IEP HCCA
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR000195 Rab-GTPase-TBC_dom 252 477
No external refs found!