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  5. Solyc04g008020.3.1

Solyc04g008020.3.1 (Solyc04g008020)


Aliases : Solyc04g008020

Description : RING-H2-class E3 ligase


Gene families : OG0001080 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001080_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g008020.3.1
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Ceric.27G035500.1 Ceric.27G035500 E3 ubiquitin ligase *(RIE1) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g02227 No alias E3 ubiquitin ligase *(RIE1) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os02g50290.1 LOC_Os02g50290 RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
Sam_g50585 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g18907 No alias E3 ubiquiTin ligase *(RIE1) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0009072 aromatic amino acid metabolic process IEP HCCA
BP GO:0009073 aromatic amino acid family biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 300 342
No external refs found!