Solyc04g007510.4.1 (Solyc04g007510)

Aliases : Solyc04g007510

Description : DExH-box ATP-dependent RNA helicase DExH5, mitochondrial OS=Arabidopsis thaliana (sp|f4im84|dexh5_arath : 1476.0)

Gene families : OG0000629 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc04g007510.4.1
Cluster	HCCA: Cluster_21

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00025p00230510	evm_27.TU.AmTr_v1...	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.04	OrthoFinder output from all 47 species
AT1G48650	No alias	DEA(D/H)-box RNA helicase family protein	0.05	OrthoFinder output from all 47 species
AT2G01130	No alias	DEA(D/H)-box RNA helicase family protein	0.03	OrthoFinder output from all 47 species
Adi_g021909	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g023361	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g105502	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g29313	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g10895	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g14017	No alias	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Aspi01Gene70472.t2	Aspi01Gene70472	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0449.g070725	No alias	not classified & original description: CDS=208-3285	0.02	OrthoFinder output from all 47 species
Cba_g14820	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g75305	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.20G077000.1	Ceric.20G077000	not classified & original description: pacid=50565979...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000786.1	No alias	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021094.26	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Cre06.g266416	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.02	OrthoFinder output from all 47 species
Dac_g20907	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g44577	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g09821	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g15250	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01008365001	No alias	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana	0.05	OrthoFinder output from all 47 species
Gb_40990	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
Len_g41812	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Len_g47532	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_10437209g0010	No alias	DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
MA_6081481g0010	No alias	DExH-box ATP-dependent RNA helicase DExH7, chloroplastic...	0.06	OrthoFinder output from all 47 species
Ore_g43492	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g08117	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g14536	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g15305	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo173775	No alias	DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR011709	DEAD-box_helicase_OB_fold	879	961
IPR011545	DEAD/DEAH_box_helicase_dom	272	423
IPR007502	Helicase-assoc_dom	724	798
IPR014720	dsRBD_dom	1068	1130
IPR001650	Helicase_C	528	660

External Links

No external refs found!

Solyc04g007510.4.1 (Solyc04g007510)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation