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  5. Solyc04g007280.3.1

Solyc04g007280.3.1 (Solyc04g007280)


Aliases : Solyc04g007280

Description : NUP98 nucleoporin of nuclear pore complex


Gene families : OG0001205 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001205_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc04g007280.3.1

Target Alias Description ECC score Gene Family Method Actions
AT1G10390 No alias Nucleoporin autopeptidase 0.05 OrthoFinder output from all 47 species
AT1G80680 NUP96, PRE, SAR3, MOS3 SUPPRESSOR OF AUXIN RESISTANCE 3 0.03 OrthoFinder output from all 47 species
Adi_g014270 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g086878 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.05 OrthoFinder output from all 47 species
Ala_g06973 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.08 OrthoFinder output from all 47 species
Ala_g12918 NUP96, PRE, SAR3, MOS3 scaffold nucleoporin of nuclear pore complex & original... 0.02 OrthoFinder output from all 47 species
Als_g02615 NUP96, PRE, SAR3, MOS3 nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Aop_g08739 NUP96, PRE, SAR3, MOS3 nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Aop_g62728 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene58837.t2 Aspi01Gene58837 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0002.g001507 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0012.g012932 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.05 OrthoFinder output from all 47 species
Cba_g09959 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
Ceric.23G078300.1 Ceric.23G078300 nucleoporin of nuclear pore complex *(NUP98) & original... 0.08 OrthoFinder output from all 47 species
Cre02.g086887 No alias Nuclear pore complex protein NUP98A OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Dac_g07068 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g08969 NUP96, PRE, SAR3, MOS3 nucleoporin of nuclear pore complex *(NUP98) & original... 0.07 OrthoFinder output from all 47 species
Dcu_g22620 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.04 OrthoFinder output from all 47 species
Ehy_g15785 NUP96, PRE, SAR3, MOS3 scaffold nucleoporin of nuclear pore complex & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01019716001 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.07 OrthoFinder output from all 47 species
Gb_07065 No alias NUP98 nucleoporin of nuclear pore complex 0.06 OrthoFinder output from all 47 species
Gb_29033 NUP96, PRE, SAR3, MOS3 NUP96 scaffold nucleoporin of nuclear pore complex 0.06 OrthoFinder output from all 47 species
LOC_Os03g07580.1 NUP96, PRE,... NUP96 scaffold nucleoporin of nuclear pore complex 0.05 OrthoFinder output from all 47 species
LOC_Os12g06890.1 LOC_Os12g06890 NUP98 nucleoporin of nuclear pore complex 0.08 OrthoFinder output from all 47 species
MA_62342g0010 No alias NUP98 nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Mp2g01050.1 NUP96, PRE, SAR3, MOS3 NUP96 scaffold nucleoporin of nuclear pore complex.... 0.05 OrthoFinder output from all 47 species
Msp_g06362 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Ore_g15205 NUP96, PRE, SAR3, MOS3 scaffold nucleoporin of nuclear pore complex & original... 0.07 OrthoFinder output from all 47 species
Ore_g22018 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.07 OrthoFinder output from all 47 species
Ore_g26256 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g29549 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g03244 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.02 OrthoFinder output from all 47 species
Tin_g11653 No alias nucleoporin of nuclear pore complex *(NUP98) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e020801_P003 Zm00001e020801 NUP98 nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
BP GO:0006913 nucleocytoplasmic transport IEA Interproscan
MF GO:0017056 structural constituent of nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
InterPro domains Description Start Stop
IPR007230 Nup98_auto-Pept-S59_dom 834 979
No external refs found!