LOC_Os10g41230 (Os10g0561800)

Aliases : Os10g0561800

Description : 27.3.22 RNA.regulation of transcription.HB,Homeobox transcription factor family Encodes a homeodomain protein whose expression displays a dependence on phyB for both red and far-red light response. Also involved in the shade avoidance syndrome. homeobox-leucine zipper protein 4 (HB4)

Gene families : OG_01_0000206 (Gene family) Phylogenetic Tree(s): OG0000206_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): LOC_Os10g41230
Cluster	HCCA cluster: Cluster_201

Target	Alias	Description	ECC score	Gene Family Method
AT2G22800	HAT9	Homeobox-leucine zipper protein family	0.02	Gene family
AT4G37790	HAT22	Homeobox-leucine zipper protein family	0.03	Gene family
LOC_Os09g27450	Os09g0447000	33.99 development.unspecified Homeobox-leucine zipper...	0.02	Gene family
MA_12174g0010	No alias	33.99 development.unspecified Homeobox-leucine zipper...	0.02	Gene family
Solyc02g063520.3.1	Solyc02g063520.3	33.99 development.unspecified Encodes homeobox protein...	0.03	Gene family
Solyc05g008050.2.1	Solyc05g008050.2	27.3.22 RNA.regulation of transcription.HB,Homeobox...	0.02	Gene family
Solyc08g078300.3.1	Solyc08g078300.3	27.3.22 RNA.regulation of transcription.HB,Homeobox...	0.03	Gene family
Zm00001d005875	GRMZM2G366130	33.99 development.unspecified Homeobox-leucine zipper...	0.05	Gene family
Zm00001d014628	GRMZM2G477415	27.3.22 RNA.regulation of transcription.HB,Homeobox...	0.04	Gene family
Zm00001d014630	GRMZM2G307397	33.99 development.unspecified Encodes homeobox protein...	0.05	Gene family
Zm00001d020670	GRMZM2G127537	33.99 development.unspecified Homeobox-leucine zipper...	0.03	Gene family
Zm00001d028304	GRMZM2G126808	33.99 development.unspecified Homeobox-leucine zipper...	0.02	Gene family

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	InterProScan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	156	210
IPR006712	HD-ZIP_N	19	135
IPR003106	Leu_zip_homeo	212	246

External Links

No external refs found!

LOC_Os10g41230 (Os10g0561800)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation