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  5. Solyc03g123960.3.1

Solyc03g123960.3.1 (MED8, Solyc03g123960)


Aliases : MED8, Solyc03g123960

Description : component MED8 of head module of MEDIATOR transcription co-activator complex


Gene families : OG0006634 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006634_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g123960.3.1

Target Alias Description ECC score Gene Family Method Actions
Adi_g086716 MED8 component *(MED8) of head module of MEDIATOR... 0.02 OrthoFinder output from all 47 species
Ala_g13871 MED8 component *(MED8) of head module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
LOC_Os03g31010.1 MED8, LOC_Os03g31010 component MED8 of head module of MEDIATOR transcription... 0.12 OrthoFinder output from all 47 species
Mp1g02240.1 MED8 component MED8 of head module of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Ore_g18496 MED8 component *(MED8) of head module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0069.g016614 MED8 component *(MED8) of head module of MEDIATOR... 0.07 OrthoFinder output from all 47 species
Sam_g29871 No alias component *(MED8) of head module of MEDIATOR... 0.03 OrthoFinder output from all 47 species
Tin_g08794 MED8 component *(MED8) of head module of MEDIATOR... 0.05 OrthoFinder output from all 47 species
Zm00001e034880_P001 MED8, Zm00001e034880 component MED8 of head module of MEDIATOR transcription... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!