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  5. Solyc03g119070.2.1

Solyc03g119070.2.1 (Solyc03g119070)


Aliases : Solyc03g119070

Description : homologous recombination repair exonuclease (EXO1)


Gene families : OG0003251 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003251_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g119070.2.1
Cluster HCCA: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00265020 evm_27.TU.AmTr_v1... DNA damage response.DNA repair mechanisms.homologous... 0.05 OrthoFinder output from all 47 species
Adi_g115102 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g04330 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0009.g011947 No alias not classified & original description: CDS=18-1211 0.07 OrthoFinder output from all 47 species
Ceric.01G025500.1 Ceric.01G025500 homologous recombination repair exonuclease *(EXO1) &... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000403.40 No alias DNA damage response.DNA repair mechanisms.homologous... 0.01 OrthoFinder output from all 47 species
Dac_g38690 No alias homologous recombination repair exonuclease *(EXO1) &... 0.08 OrthoFinder output from all 47 species
GSVIVT01008397001 No alias DNA damage response.DNA repair mechanisms.homologous... 0.18 OrthoFinder output from all 47 species
GSVIVT01021316001 No alias DNA damage response.DNA repair mechanisms.homologous... 0.14 OrthoFinder output from all 47 species
Gb_14686 No alias homologous recombination repair exonuclease (EXO1) 0.14 OrthoFinder output from all 47 species
LOC_Os01g56940.1 LOC_Os01g56940 homologous recombination repair exonuclease (EXO1) 0.04 OrthoFinder output from all 47 species
Len_g01347 No alias homologous recombination repair exonuclease *(EXO1) &... 0.03 OrthoFinder output from all 47 species
MA_10426397g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_10431686g0010 No alias homologous recombination repair exonuclease (EXO1) 0.08 OrthoFinder output from all 47 species
Msp_g36441 No alias homologous recombination repair exonuclease *(EXO1) &... 0.07 OrthoFinder output from all 47 species
Nbi_g04891 No alias homologous recombination repair exonuclease *(EXO1) &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0056.g014655 No alias homologous recombination repair exonuclease *(EXO1) &... 0.08 OrthoFinder output from all 47 species
Sam_g35172 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g41224 No alias homologous recombination repair exonuclease *(EXO1) &... 0.04 OrthoFinder output from all 47 species
Spa_g51609 No alias homologous recombination repair exonuclease *(EXO1) &... 0.02 OrthoFinder output from all 47 species
Tin_g07816 No alias homologous recombination repair exonuclease *(EXO1) &... 0.02 OrthoFinder output from all 47 species
Tin_g11001 No alias homologous recombination repair exonuclease *(EXO1) &... 0.05 OrthoFinder output from all 47 species
Zm00001e019645_P001 Zm00001e019645 homologous recombination repair exonuclease (EXO1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
CC GO:0000808 origin recognition complex IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003896 DNA primase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005664 nuclear origin of replication recognition complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR006086 XPG-I_dom 142 235
IPR006085 XPG_DNA_repair_N 1 101
No external refs found!