1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc03g118950.3.1

Solyc03g118950.3.1 (Solyc03g118950)


Aliases : Solyc03g118950

Description : Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica (sp|q6yw64|drb4_orysj : 106.0)


Gene families : OG0000404 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000404_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g118950.3.1
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Adi_g055443 DRB3 regulatory protein *(DRB2) of miRNA biogenesis pathway &... 0.02 OrthoFinder output from all 47 species
Adi_g082906 DRB3 regulatory protein *(DRB2) of miRNA biogenesis pathway &... 0.02 OrthoFinder output from all 47 species
Adi_g114855 DRB3 regulatory protein *(DRB2) of miRNA biogenesis pathway &... 0.02 OrthoFinder output from all 47 species
Aob_g13755 DRB2 regulatory protein *(DRB2) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Aob_g39793 DRB2 regulatory protein *(DRB2) of miRNA biogenesis pathway &... 0.02 OrthoFinder output from all 47 species
Azfi_s0116.g046351 DRB3 regulatory protein *(DRB2) of miRNA biogenesis pathway &... 0.02 OrthoFinder output from all 47 species
Cba_g07151 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g57509 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os09g33460.1 LOC_Os09g33460 Double-stranded RNA-binding protein 5 OS=Oryza sativa... 0.03 OrthoFinder output from all 47 species
MA_463g0010 No alias component HYL1 of DCL1-HYL1 miRNA biogenesis complex 0.03 OrthoFinder output from all 47 species
Mp3g18950.1 DRB2 Double-stranded RNA-binding protein 5 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g13176 DRB1, HYL1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g52122 DRB3 regulatory protein *(DRB2) of miRNA biogenesis pathway &... 0.03 OrthoFinder output from all 47 species
Zm00001e004552_P001 DRB2, Zm00001e004552 Double-stranded RNA-binding protein 6 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Zm00001e010132_P001 DRB3, Zm00001e010132 Double-stranded RNA-binding protein 5 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR014720 dsRBD_dom 12 76
IPR014720 dsRBD_dom 98 161
No external refs found!