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  5. Solyc03g118340.3.1

Solyc03g118340.3.1 (HSP93-V, DCA1,...)


Aliases : HSP93-V, DCA1, ATHSP93-V, CLPC, CLPC1, Solyc03g118340

Description : chaperone component ClpC of chloroplast Clp-type protease complex


Gene families : OG0000193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000193_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g118340.3.1
Cluster HCCA: Cluster_153 Clade

Target Alias Description ECC score Gene Family Method Actions
Aob_g21747 CLPB3, CLPB-P, APG6 organellar chaperone *(Clp-p/Clp-m) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.02G041000.1 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.04 OrthoFinder output from all 47 species
Ceric.18G061200.1 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.03 OrthoFinder output from all 47 species
Ceric.30G013400.1 SAG15, CLPD,... chaperone component *(ClpD) of chloroplast Clp-type... 0.02 OrthoFinder output from all 47 species
Dcu_g03157 SAG15, CLPD, ERD1 chaperone component *(ClpD) of chloroplast Clp-type... 0.03 OrthoFinder output from all 47 species
GSVIVT01008636001 HSP93-V, DCA1,... External stimuli response.temperature.Hsp... 0.04 OrthoFinder output from all 47 species
GSVIVT01014062001 SAG15, CLPD, ERD1 External stimuli response.temperature.Hsp... 0.08 OrthoFinder output from all 47 species
Len_g37043 CLPB3, CLPB-P, APG6 organellar chaperone *(Clp-p/Clp-m) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g12284 HSP93-V, DCA1,... chaperone component *(ClpC) of chloroplast Clp-type... 0.03 OrthoFinder output from all 47 species
Sam_g16601 No alias chaperone component *(ClpC) of chloroplast Clp-type... 0.02 OrthoFinder output from all 47 species
Sam_g19448 No alias organellar chaperone *(Clp-p/Clp-m) & original description: none 0.03 OrthoFinder output from all 47 species
Smo439163 HSP93-V, DCA1,... External stimuli response.temperature.Hsp... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR041546 ClpA/ClpB_AAA_lid 437 538
IPR004176 Clp_R_dom 184 235
IPR004176 Clp_R_dom 108 160
IPR003959 ATPase_AAA_core 299 415
IPR019489 Clp_ATPase_C 818 898
IPR003959 ATPase_AAA_core 637 811
No external refs found!