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  5. Solyc03g117940.3.1

Solyc03g117940.3.1 (U2A', Solyc03g117940)


Aliases : U2A', Solyc03g117940

Description : protein factor U2A of U2 small nuclear ribonucleoprotein particle (snRNP)


Gene families : OG0005171 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005171_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g117940.3.1

Target Alias Description ECC score Gene Family Method Actions
Als_g21682 U2A' component *(U2A) of U2 snRNP complex & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g10647 U2A' component *(U2A) of U2 snRNP complex & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g07390 U2A' component *(U2A) of U2 snRNP complex & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01001138001 U2A' RNA processing.RNA splicing.U2-type-intron-specific... 0.04 OrthoFinder output from all 47 species
MA_764890g0010 U2A' protein factor U2A of U2 small nuclear ribonucleoprotein... 0.02 OrthoFinder output from all 47 species
Spa_g07663 U2A' component *(U2A) of U2 snRNP complex & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e006375_P001 U2A', Zm00001e006375 protein factor U2A of U2 small nuclear ribonucleoprotein... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA

No InterPro domains available for this sequence

No external refs found!