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  5. Solyc03g117430.3.1

Solyc03g117430.3.1 (PTAC17, Solyc03g117430)


Aliases : PTAC17, Solyc03g117430

Description : TAC17 cofactor of plastid-encoded RNA polymerase


Gene families : OG0001348 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001348_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g117430.3.1
Cluster HCCA: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00183310 PTAC17,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.02 OrthoFinder output from all 47 species
AT1G15730 No alias Cobalamin biosynthesis CobW-like protein 0.04 OrthoFinder output from all 47 species
Adi_g057640 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.02 OrthoFinder output from all 47 species
Cba_g11258 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.02 OrthoFinder output from all 47 species
Cba_g75832 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.02 OrthoFinder output from all 47 species
Ehy_g22577 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.02 OrthoFinder output from all 47 species
Nbi_g17819 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.03 OrthoFinder output from all 47 species
Ore_g26422 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g15394 PTAC17 cofactor of plastid-encoded RNA polymerase *(TAC17) &... 0.02 OrthoFinder output from all 47 species
Zm00001e016143_P001 Zm00001e016143 TAC17 cofactor of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR003495 CobW/HypB/UreG_dom 98 282
IPR011629 CobW-like_C 364 458
No external refs found!