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  5. LOC_Os10g40490

LOC_Os10g40490 (Os10g0552400)


Aliases : Os10g0552400

Description : 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING RING/U-box superfamily protein


Gene families : OG_01_0000109 (Gene family) Phylogenetic Tree(s): OG0000109_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): LOC_Os10g40490
Cluster HCCA cluster: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
AT1G01660 No alias RING/U-box superfamily protein 0.02 Gene family
AT2G24370 No alias Protein kinase protein with adenine nucleotide alpha... 0.02 Gene family
AT4G25160 No alias U-box domain-containing protein kinase family protein 0.02 Gene family
AT5G61550 No alias U-box domain-containing protein kinase family protein 0.03 Gene family
AT5G61560 No alias U-box domain-containing protein kinase family protein 0.03 Gene family
GSVIVT01014020001 No alias 29.4.1.59 protein.postranslational... 0.05 Gene family
GSVIVT01015162001 No alias 29.4 protein.postranslational modification U-box... 0.03 Gene family
GSVIVT01024979001 No alias 29.4.1.59 protein.postranslational... 0.05 Gene family
GSVIVT01026936001 No alias 29.4.1.59 protein.postranslational... 0.02 Gene family
GSVIVT01035572001 No alias 29.4.1.59 protein.postranslational... 0.05 Gene family
MA_15203g0010 No alias 29.4.1.59 protein.postranslational... 0.02 Gene family
MA_22360g0010 No alias 29.4.1.59 protein.postranslational... 0.02 Gene family
MA_43509g0010 No alias 29.4.1.59 protein.postranslational... 0.02 Gene family
Solyc03g025450.3.1 Solyc03g025450.3 29.4.1.59 protein.postranslational... 0.04 Gene family
Solyc12g008990.2.1 Solyc12g008990.2 29.4 protein.postranslational modification U-box... 0.02 Gene family
Zm00001d029847 GRMZM2G373329 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING... 0.03 Gene family
Zm00001d045397 GRMZM2G433433 29.4.1.59 protein.postranslational... 0.05 Gene family
Zm00001d051397 GRMZM2G010488,... 29.4.1.59 protein.postranslational... 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA InterProScan
BP GO:0016567 protein ubiquitination IEA InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003613 Ubox_domain 356 426
No external refs found!