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  5. Solyc03g117030.2.1

Solyc03g117030.2.1 (Solyc03g117030)


Aliases : Solyc03g117030

Description : Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana (sp|q9skz2|caf1g_arath : 456.0)


Gene families : OG0000833 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000833_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Solyc03g117030.2.1

Target Alias Description ECC score Gene Family Method Actions
Als_g01479 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g03983 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Azfi_s0009.g011912 No alias not classified & original description: CDS=1-1008 0.02 OrthoFinder output from all 47 species
Ceric.20G029700.1 Ceric.20G029700 deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Dac_g02678 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Dde_g02762 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Ehy_g03366 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Len_g10631 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Len_g11620 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g01805 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.02 OrthoFinder output from all 47 species
Ore_g04394 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species
Sam_g12305 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003839 gamma-glutamylcyclotransferase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006575 cellular modified amino acid metabolic process IEP HCCA
BP GO:0006749 glutathione metabolic process IEP HCCA
BP GO:0006751 glutathione catabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0015267 channel activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016842 amidine-lyase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
BP GO:0042219 cellular modified amino acid catabolic process IEP HCCA
BP GO:0043171 peptide catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044273 sulfur compound catabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR006941 RNase_CAF1 159 243
IPR006941 RNase_CAF1 17 136
No external refs found!