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  5. Solyc03g116380.4.1

Solyc03g116380.4.1 (Solyc03g116380)


Aliases : Solyc03g116380

Description : no hits & (original description: none)


Gene families : OG0005121 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005121_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g116380.4.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00144740 evm_27.TU.AmTr_v1... No description available 0.06 OrthoFinder output from all 47 species
AT5G11240 No alias transducin family protein / WD-40 repeat family protein 0.18 OrthoFinder output from all 47 species
Ala_g07852 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g47262 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g11203 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0028.g024031 No alias not classified & original description: CDS=168-2150 0.08 OrthoFinder output from all 47 species
Cba_g03965 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.1Z072200.1 Ceric.1Z072200 not classified & original description: pacid=50586493... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000123.23 No alias No description available 0.09 OrthoFinder output from all 47 species
Cre12.g538500 No alias No description available 0.24 OrthoFinder output from all 47 species
Dcu_g09409 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01017246001 No alias No description available 0.14 OrthoFinder output from all 47 species
GSVIVT01035079001 No alias No description available 0.06 OrthoFinder output from all 47 species
Gb_29253 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os01g46060.1 LOC_Os01g46060 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
LOC_Os03g18840.1 LOC_Os03g18840 no hits & (original description: none) 0.12 OrthoFinder output from all 47 species
MA_10435957g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp5g00060.1 No alias no hits & (original description: none) 0.18 OrthoFinder output from all 47 species
Msp_g11307 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g17083 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13559 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c7_70V3.1 Pp3c7_70 transducin family protein / WD-40 repeat family protein 0.04 OrthoFinder output from all 47 species
Sam_g36919 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Smo404454 No alias No description available 0.08 OrthoFinder output from all 47 species
Tin_g02088 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e001372_P001 Zm00001e001372 no hits & (original description: none) 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR007148 SSU_processome_Utp12 461 562
No external refs found!