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  5. Solyc03g115150.4.1

Solyc03g115150.4.1 (ATHDA5, HDA05, HDA5,...)


Aliases : ATHDA5, HDA05, HDA5, Solyc03g115150

Description : class-II histone deacetylase


Gene families : OG0001559 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001559_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g115150.4.1

Target Alias Description ECC score Gene Family Method Actions
Als_g01049 ATHDA15, HDA15 class-II histone deacetylase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene15031.t1 ATHDA5, HDA05,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000093.133 ATHDA5, HDA05, HDA5 Histone deacetylase 5 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre11.g467706 ATHDA18, HDA18 Chromatin organisation.histone modifications.histone... 0.02 OrthoFinder output from all 47 species
Dde_g24471 ATHDA15, HDA15 class-II histone deacetylase & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os07g41090.1 ATHDA5, HDA05,... class-II histone deacetylase 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 28 327
No external refs found!