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  5. Solyc03g114690.4.1

Solyc03g114690.4.1 (Solyc03g114690)


Aliases : Solyc03g114690

Description : LHP1-regulatory component ELP1 of PRC1 histone mono-ubiquitination complex


Gene families : OG0008546 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008546_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc03g114690.4.1

Target Alias Description ECC score Gene Family Method Actions
AT3G42660 No alias transducin family protein / WD-40 repeat family protein 0.03 OrthoFinder output from all 47 species
Aop_g01393 No alias regulatory protein ELP1 of PRC1 histone... 0.06 OrthoFinder output from all 47 species
Aspi01Gene32678.t1 Aspi01Gene32678 regulatory protein ELP1 of PRC1 histone... 0.09 OrthoFinder output from all 47 species
Azfi_s0008.g011648 No alias regulatory protein ELP1 of PRC1 histone... 0.08 OrthoFinder output from all 47 species
Ceric.29G024200.1 Ceric.29G024200 regulatory protein ELP1 of PRC1 histone... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020780.19 No alias No description available 0.06 OrthoFinder output from all 47 species
Cre16.g652950 No alias No description available 0.08 OrthoFinder output from all 47 species
Dac_g13525 No alias regulatory protein ELP1 of PRC1 histone... 0.08 OrthoFinder output from all 47 species
Gb_40172 No alias LHP1-regulatory component ELP1 of PRC1 histone... 0.15 OrthoFinder output from all 47 species
LOC_Os09g06560.1 LOC_Os09g06560 LHP1-regulatory component ELP1 of PRC1 histone... 0.05 OrthoFinder output from all 47 species
Len_g07259 No alias regulatory protein ELP1 of PRC1 histone... 0.03 OrthoFinder output from all 47 species
MA_10431892g0020 No alias LHP1-regulatory component ELP1 of PRC1 histone... 0.12 OrthoFinder output from all 47 species
Mp4g09220.1 No alias LHP1-regulatory component ELP1 of PRC1 histone... 0.12 OrthoFinder output from all 47 species
Nbi_g24640 No alias regulatory protein ELP1 of PRC1 histone... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0218.g026104 No alias regulatory protein ELP1 of PRC1 histone... 0.06 OrthoFinder output from all 47 species
Sam_g08424 No alias regulatory protein ELP1 of PRC1 histone... 0.05 OrthoFinder output from all 47 species
Spa_g56089 No alias regulatory protein ELP1 of PRC1 histone... 0.03 OrthoFinder output from all 47 species
Tin_g28315 No alias regulatory protein ELP1 of PRC1 histone... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003896 DNA primase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006284 base-excision repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
CC GO:0042575 DNA polymerase complex IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043625 delta DNA polymerase complex IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR022100 Mcl1_mid 309 591
IPR024977 Apc4_WD40_dom 84 171
IPR001680 WD40_repeat 23 56
No external refs found!