Solyc03g113860.2.1 (Solyc03g113860)

Aliases : Solyc03g113860

Description : no hits & (original description: none)

Gene families : OG0007796 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007796_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc03g113860.2.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00108p00034740	evm_27.TU.AmTr_v1...	No description available	0.04	OrthoFinder output from all 47 species
Als_g20620	No alias	RsmG-type rRNA methyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g01202	No alias	RsmG-type rRNA methyltransferase & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0074.g037322	No alias	RsmG-type rRNA methyltransferase & original description:...	0.02	OrthoFinder output from all 47 species
Ceric.31G000400.1	Ceric.31G000400	RsmG-type rRNA methyltransferase & original description:...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020927.46	No alias	No description available	0.01	OrthoFinder output from all 47 species
Dcu_g05350	No alias	RsmG-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g07760	No alias	RsmG-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Len_g01043	No alias	RsmG-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g25868	No alias	RsmG-type rRNA methyltransferase & original description: none	0.04	OrthoFinder output from all 47 species
Pir_g06948	No alias	RsmG-type rRNA methyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g08282	No alias	RsmG-type rRNA methyltransferase & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0113.g020823	No alias	RsmG-type rRNA methyltransferase & original description:...	0.03	OrthoFinder output from all 47 species
Sam_g23814	No alias	RsmG-type rRNA methyltransferase & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e030895_P003	Zm00001e030895	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	None	Extended
MF	GO:0008173	RNA methyltransferase activity	None	Extended
MF	GO:0008649	rRNA methyltransferase activity	IEA	Interproscan
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140102	catalytic activity, acting on a rRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003682	rRNA_ssu_MeTfrase_G	63	256

External Links

No external refs found!

Solyc03g113860.2.1 (Solyc03g113860)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation